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RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D
Now in its 52nd year of continuous operations, the Protein Data Bank (PDB) is the premiere open‐access global archive housing three‐dimensional (3D) biomolecular structure data. It is jointly managed by the Worldwide Protein Data Bank (wwPDB) partnership. The Research Collaboratory for Structural Bi...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9667899/ https://www.ncbi.nlm.nih.gov/pubmed/36281733 http://dx.doi.org/10.1002/pro.4482 |
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author | Burley, Stephen K. Bhikadiya, Charmi Bi, Chunxiao Bittrich, Sebastian Chao, Henry Chen, Li Craig, Paul A. Crichlow, Gregg V. Dalenberg, Kenneth Duarte, Jose M. Dutta, Shuchismita Fayazi, Maryam Feng, Zukang Flatt, Justin W. Ganesan, Sai J. Ghosh, Sutapa Goodsell, David S. Green, Rachel Kramer Guranovic, Vladimir Henry, Jeremy Hudson, Brian P. Khokhriakov, Igor Lawson, Catherine L. Liang, Yuhe Lowe, Robert Peisach, Ezra Persikova, Irina Piehl, Dennis W. Rose, Yana Sali, Andrej Segura, Joan Sekharan, Monica Shao, Chenghua Vallat, Brinda Voigt, Maria Webb, Benjamin Westbrook, John D. Whetstone, Shamara Young, Jasmine Y. Zalevsky, Arthur Zardecki, Christine |
author_facet | Burley, Stephen K. Bhikadiya, Charmi Bi, Chunxiao Bittrich, Sebastian Chao, Henry Chen, Li Craig, Paul A. Crichlow, Gregg V. Dalenberg, Kenneth Duarte, Jose M. Dutta, Shuchismita Fayazi, Maryam Feng, Zukang Flatt, Justin W. Ganesan, Sai J. Ghosh, Sutapa Goodsell, David S. Green, Rachel Kramer Guranovic, Vladimir Henry, Jeremy Hudson, Brian P. Khokhriakov, Igor Lawson, Catherine L. Liang, Yuhe Lowe, Robert Peisach, Ezra Persikova, Irina Piehl, Dennis W. Rose, Yana Sali, Andrej Segura, Joan Sekharan, Monica Shao, Chenghua Vallat, Brinda Voigt, Maria Webb, Benjamin Westbrook, John D. Whetstone, Shamara Young, Jasmine Y. Zalevsky, Arthur Zardecki, Christine |
author_sort | Burley, Stephen K. |
collection | PubMed |
description | Now in its 52nd year of continuous operations, the Protein Data Bank (PDB) is the premiere open‐access global archive housing three‐dimensional (3D) biomolecular structure data. It is jointly managed by the Worldwide Protein Data Bank (wwPDB) partnership. The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is funded by the National Science Foundation, National Institutes of Health, and US Department of Energy and serves as the US data center for the wwPDB. RCSB PDB is also responsible for the security of PDB data in its role as wwPDB‐designated Archive Keeper. Every year, RCSB PDB serves tens of thousands of depositors of 3D macromolecular structure data (coming from macromolecular crystallography, nuclear magnetic resonance spectroscopy, electron microscopy, and micro‐electron diffraction). The RCSB PDB research‐focused web portal (RCSB.org) makes PDB data available at no charge and without usage restrictions to many millions of PDB data consumers around the world. The RCSB PDB training, outreach, and education web portal (PDB101.RCSB.org) serves nearly 700 K educators, students, and members of the public worldwide. This invited Tools Issue contribution describes how RCSB PDB (i) is organized; (ii) works with wwPDB partners to process new depositions; (iii) serves as the wwPDB‐designated Archive Keeper; (iv) enables exploration and 3D visualization of PDB data via RCSB.org; and (v) supports training, outreach, and education via PDB101.RCSB.org. New tools and features at RCSB.org are presented using examples drawn from high‐resolution structural studies of proteins relevant to treatment of human cancers by targeting immune checkpoints. |
format | Online Article Text |
id | pubmed-9667899 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96678992022-12-01 RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D Burley, Stephen K. Bhikadiya, Charmi Bi, Chunxiao Bittrich, Sebastian Chao, Henry Chen, Li Craig, Paul A. Crichlow, Gregg V. Dalenberg, Kenneth Duarte, Jose M. Dutta, Shuchismita Fayazi, Maryam Feng, Zukang Flatt, Justin W. Ganesan, Sai J. Ghosh, Sutapa Goodsell, David S. Green, Rachel Kramer Guranovic, Vladimir Henry, Jeremy Hudson, Brian P. Khokhriakov, Igor Lawson, Catherine L. Liang, Yuhe Lowe, Robert Peisach, Ezra Persikova, Irina Piehl, Dennis W. Rose, Yana Sali, Andrej Segura, Joan Sekharan, Monica Shao, Chenghua Vallat, Brinda Voigt, Maria Webb, Benjamin Westbrook, John D. Whetstone, Shamara Young, Jasmine Y. Zalevsky, Arthur Zardecki, Christine Protein Sci Tools for Protein Science Now in its 52nd year of continuous operations, the Protein Data Bank (PDB) is the premiere open‐access global archive housing three‐dimensional (3D) biomolecular structure data. It is jointly managed by the Worldwide Protein Data Bank (wwPDB) partnership. The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is funded by the National Science Foundation, National Institutes of Health, and US Department of Energy and serves as the US data center for the wwPDB. RCSB PDB is also responsible for the security of PDB data in its role as wwPDB‐designated Archive Keeper. Every year, RCSB PDB serves tens of thousands of depositors of 3D macromolecular structure data (coming from macromolecular crystallography, nuclear magnetic resonance spectroscopy, electron microscopy, and micro‐electron diffraction). The RCSB PDB research‐focused web portal (RCSB.org) makes PDB data available at no charge and without usage restrictions to many millions of PDB data consumers around the world. The RCSB PDB training, outreach, and education web portal (PDB101.RCSB.org) serves nearly 700 K educators, students, and members of the public worldwide. This invited Tools Issue contribution describes how RCSB PDB (i) is organized; (ii) works with wwPDB partners to process new depositions; (iii) serves as the wwPDB‐designated Archive Keeper; (iv) enables exploration and 3D visualization of PDB data via RCSB.org; and (v) supports training, outreach, and education via PDB101.RCSB.org. New tools and features at RCSB.org are presented using examples drawn from high‐resolution structural studies of proteins relevant to treatment of human cancers by targeting immune checkpoints. John Wiley & Sons, Inc. 2022-12 /pmc/articles/PMC9667899/ /pubmed/36281733 http://dx.doi.org/10.1002/pro.4482 Text en © 2022 The Protein Society. Open access. |
spellingShingle | Tools for Protein Science Burley, Stephen K. Bhikadiya, Charmi Bi, Chunxiao Bittrich, Sebastian Chao, Henry Chen, Li Craig, Paul A. Crichlow, Gregg V. Dalenberg, Kenneth Duarte, Jose M. Dutta, Shuchismita Fayazi, Maryam Feng, Zukang Flatt, Justin W. Ganesan, Sai J. Ghosh, Sutapa Goodsell, David S. Green, Rachel Kramer Guranovic, Vladimir Henry, Jeremy Hudson, Brian P. Khokhriakov, Igor Lawson, Catherine L. Liang, Yuhe Lowe, Robert Peisach, Ezra Persikova, Irina Piehl, Dennis W. Rose, Yana Sali, Andrej Segura, Joan Sekharan, Monica Shao, Chenghua Vallat, Brinda Voigt, Maria Webb, Benjamin Westbrook, John D. Whetstone, Shamara Young, Jasmine Y. Zalevsky, Arthur Zardecki, Christine RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D |
title |
RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D
|
title_full |
RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D
|
title_fullStr |
RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D
|
title_full_unstemmed |
RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D
|
title_short |
RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D
|
title_sort | rcsb protein data bank: tools for visualizing and understanding biological macromolecules in 3d |
topic | Tools for Protein Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9667899/ https://www.ncbi.nlm.nih.gov/pubmed/36281733 http://dx.doi.org/10.1002/pro.4482 |
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