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Drug repurposing in psoriasis, performed by reversal of disease-associated gene expression profiles

Psoriasis is a skin disease which results in scales on the skin caused by flaky patches. Psoriasis is triggered by various conditions such as drug reactions, trauma, and skin infection etc. Globally, there are 125 million people affected by psoriasis and yet there is no effective treatment available...

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Autores principales: Ahmed, Faheem, Ho, Son Gi, Samantasinghar, Anupama, Memon, Fida Hussain, Rahim, Chethikkattuveli Salih Abdul, Soomro, Afaque Manzoor, Pratibha, Sunildutt, Naina, Kim, Kyung Hwan, Choi, Kyung Hyun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9668643/
https://www.ncbi.nlm.nih.gov/pubmed/36420161
http://dx.doi.org/10.1016/j.csbj.2022.10.046
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author Ahmed, Faheem
Ho, Son Gi
Samantasinghar, Anupama
Memon, Fida Hussain
Rahim, Chethikkattuveli Salih Abdul
Soomro, Afaque Manzoor
Pratibha
Sunildutt, Naina
Kim, Kyung Hwan
Choi, Kyung Hyun
author_facet Ahmed, Faheem
Ho, Son Gi
Samantasinghar, Anupama
Memon, Fida Hussain
Rahim, Chethikkattuveli Salih Abdul
Soomro, Afaque Manzoor
Pratibha
Sunildutt, Naina
Kim, Kyung Hwan
Choi, Kyung Hyun
author_sort Ahmed, Faheem
collection PubMed
description Psoriasis is a skin disease which results in scales on the skin caused by flaky patches. Psoriasis is triggered by various conditions such as drug reactions, trauma, and skin infection etc. Globally, there are 125 million people affected by psoriasis and yet there is no effective treatment available, and it emphasizes the need for discovery of efficacious treatments. De-novo drug development takes 10–17 years and $2–$3 billion of investment with <10 % success rate to bring drug from concept to a market ready product. A possible alternative is drug repurposing, which aims at finding other indications of already approved drugs. In this study, a computational drug repurposing framework is developed and applied to differential gene expressions of Psoriasis targets obtained from the publicly available database (GEO). This strategy uses the gene expression signatures of the Psoriasis and compares it with perturbagen available in the CMap. Based on the connected signature drugs are ranked which could possibly reverse the signatures to stop the psoriasis. The drugs with most negative connectivity scores are ranked efficient and vice versa. The top hit drugs are verified using the literature survey of the peer reviewed journal, electronic health records, patents, and hospital database. As a result, 50/150 and 37/150 drugs are confirmed to have anti-psoriasis efficacy in two datasets. Top 10 drugs are suggested as potential repurposable drugs for psoriasis. This study offers, a powerful yet simple approach for rapid identification of potential drug repurposing candidates in Psoriasis and any disease of interest.
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spelling pubmed-96686432022-11-22 Drug repurposing in psoriasis, performed by reversal of disease-associated gene expression profiles Ahmed, Faheem Ho, Son Gi Samantasinghar, Anupama Memon, Fida Hussain Rahim, Chethikkattuveli Salih Abdul Soomro, Afaque Manzoor Pratibha Sunildutt, Naina Kim, Kyung Hwan Choi, Kyung Hyun Comput Struct Biotechnol J Special Issue articles from "Computational Methods for the Immune System Function" edited by Francesco Pappalardo and Giulia Russo Psoriasis is a skin disease which results in scales on the skin caused by flaky patches. Psoriasis is triggered by various conditions such as drug reactions, trauma, and skin infection etc. Globally, there are 125 million people affected by psoriasis and yet there is no effective treatment available, and it emphasizes the need for discovery of efficacious treatments. De-novo drug development takes 10–17 years and $2–$3 billion of investment with <10 % success rate to bring drug from concept to a market ready product. A possible alternative is drug repurposing, which aims at finding other indications of already approved drugs. In this study, a computational drug repurposing framework is developed and applied to differential gene expressions of Psoriasis targets obtained from the publicly available database (GEO). This strategy uses the gene expression signatures of the Psoriasis and compares it with perturbagen available in the CMap. Based on the connected signature drugs are ranked which could possibly reverse the signatures to stop the psoriasis. The drugs with most negative connectivity scores are ranked efficient and vice versa. The top hit drugs are verified using the literature survey of the peer reviewed journal, electronic health records, patents, and hospital database. As a result, 50/150 and 37/150 drugs are confirmed to have anti-psoriasis efficacy in two datasets. Top 10 drugs are suggested as potential repurposable drugs for psoriasis. This study offers, a powerful yet simple approach for rapid identification of potential drug repurposing candidates in Psoriasis and any disease of interest. Research Network of Computational and Structural Biotechnology 2022-11-09 /pmc/articles/PMC9668643/ /pubmed/36420161 http://dx.doi.org/10.1016/j.csbj.2022.10.046 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Special Issue articles from "Computational Methods for the Immune System Function" edited by Francesco Pappalardo and Giulia Russo
Ahmed, Faheem
Ho, Son Gi
Samantasinghar, Anupama
Memon, Fida Hussain
Rahim, Chethikkattuveli Salih Abdul
Soomro, Afaque Manzoor
Pratibha
Sunildutt, Naina
Kim, Kyung Hwan
Choi, Kyung Hyun
Drug repurposing in psoriasis, performed by reversal of disease-associated gene expression profiles
title Drug repurposing in psoriasis, performed by reversal of disease-associated gene expression profiles
title_full Drug repurposing in psoriasis, performed by reversal of disease-associated gene expression profiles
title_fullStr Drug repurposing in psoriasis, performed by reversal of disease-associated gene expression profiles
title_full_unstemmed Drug repurposing in psoriasis, performed by reversal of disease-associated gene expression profiles
title_short Drug repurposing in psoriasis, performed by reversal of disease-associated gene expression profiles
title_sort drug repurposing in psoriasis, performed by reversal of disease-associated gene expression profiles
topic Special Issue articles from "Computational Methods for the Immune System Function" edited by Francesco Pappalardo and Giulia Russo
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9668643/
https://www.ncbi.nlm.nih.gov/pubmed/36420161
http://dx.doi.org/10.1016/j.csbj.2022.10.046
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