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Prediction of the immunological and prognostic value of five signatures related to fatty acid metabolism in patients with cervical cancer
A growing attention has been attached to the role of fatty acid metabolism (FAM) in the development of cancer, and cervical cancer (CC) is still the primary cause of cancer-associated death in women worldwide. Therefore, it is imperative to explore the possible prognostic significance of FAM in CC....
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9671136/ https://www.ncbi.nlm.nih.gov/pubmed/36408178 http://dx.doi.org/10.3389/fonc.2022.1003222 |
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author | Zeng, Qiongjing Jiang, Huici Lu, Fang Fu, Mingxu Bi, Yingying Zhou, Zengding Cheng, Jiajing Qin, Jinlong |
author_facet | Zeng, Qiongjing Jiang, Huici Lu, Fang Fu, Mingxu Bi, Yingying Zhou, Zengding Cheng, Jiajing Qin, Jinlong |
author_sort | Zeng, Qiongjing |
collection | PubMed |
description | A growing attention has been attached to the role of fatty acid metabolism (FAM) in the development of cancer, and cervical cancer (CC) is still the primary cause of cancer-associated death in women worldwide. Therefore, it is imperative to explore the possible prognostic significance of FAM in CC. In this study, CC samples and corresponding normal samples were acquired from the Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx). Single sample gene set enrichment analysis (ssGSEA) was conducted for calculating FAM-related scores (FAMRs) to screen FAM-related genes (FAMRGs). Two subtypes related to FAM were identified by consistent clustering. Among them, subtype C2 had a poor prognosis, and C1 had a high level of immune cell infiltration, while C2 had a high possibility of immune escape and was insensitive to chemotherapy drugs. Based on the differentially expressed genes (DEGs) in the two subtypes, a 5-gene signature (PLCB4, FBLN5, TSPAN8, CST6, and SERPINB7) was generated by the least absolute shrinkage and selection operator (LASSO) and Akaike information criterion (AIC). The model demonstrated a high prognostic accuracy (area under the curve (AUC)>0.7) in multiple cohorts and was one independent prognostic factor for CC patients. Accordingly, FAMRGs can be adopted as a biomarker for the prediction of CC patients’ prognosis and help guide the immunotherapy of CC. |
format | Online Article Text |
id | pubmed-9671136 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96711362022-11-18 Prediction of the immunological and prognostic value of five signatures related to fatty acid metabolism in patients with cervical cancer Zeng, Qiongjing Jiang, Huici Lu, Fang Fu, Mingxu Bi, Yingying Zhou, Zengding Cheng, Jiajing Qin, Jinlong Front Oncol Oncology A growing attention has been attached to the role of fatty acid metabolism (FAM) in the development of cancer, and cervical cancer (CC) is still the primary cause of cancer-associated death in women worldwide. Therefore, it is imperative to explore the possible prognostic significance of FAM in CC. In this study, CC samples and corresponding normal samples were acquired from the Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx). Single sample gene set enrichment analysis (ssGSEA) was conducted for calculating FAM-related scores (FAMRs) to screen FAM-related genes (FAMRGs). Two subtypes related to FAM were identified by consistent clustering. Among them, subtype C2 had a poor prognosis, and C1 had a high level of immune cell infiltration, while C2 had a high possibility of immune escape and was insensitive to chemotherapy drugs. Based on the differentially expressed genes (DEGs) in the two subtypes, a 5-gene signature (PLCB4, FBLN5, TSPAN8, CST6, and SERPINB7) was generated by the least absolute shrinkage and selection operator (LASSO) and Akaike information criterion (AIC). The model demonstrated a high prognostic accuracy (area under the curve (AUC)>0.7) in multiple cohorts and was one independent prognostic factor for CC patients. Accordingly, FAMRGs can be adopted as a biomarker for the prediction of CC patients’ prognosis and help guide the immunotherapy of CC. Frontiers Media S.A. 2022-11-03 /pmc/articles/PMC9671136/ /pubmed/36408178 http://dx.doi.org/10.3389/fonc.2022.1003222 Text en Copyright © 2022 Zeng, Jiang, Lu, Fu, Bi, Zhou, Cheng and Qin https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Zeng, Qiongjing Jiang, Huici Lu, Fang Fu, Mingxu Bi, Yingying Zhou, Zengding Cheng, Jiajing Qin, Jinlong Prediction of the immunological and prognostic value of five signatures related to fatty acid metabolism in patients with cervical cancer |
title | Prediction of the immunological and prognostic value of five signatures related to fatty acid metabolism in patients with cervical cancer |
title_full | Prediction of the immunological and prognostic value of five signatures related to fatty acid metabolism in patients with cervical cancer |
title_fullStr | Prediction of the immunological and prognostic value of five signatures related to fatty acid metabolism in patients with cervical cancer |
title_full_unstemmed | Prediction of the immunological and prognostic value of five signatures related to fatty acid metabolism in patients with cervical cancer |
title_short | Prediction of the immunological and prognostic value of five signatures related to fatty acid metabolism in patients with cervical cancer |
title_sort | prediction of the immunological and prognostic value of five signatures related to fatty acid metabolism in patients with cervical cancer |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9671136/ https://www.ncbi.nlm.nih.gov/pubmed/36408178 http://dx.doi.org/10.3389/fonc.2022.1003222 |
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