Cargando…

A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations

Despite the growing availability of artificial intelligence models for predicting type 2 diabetes, there is still a lack of personalized approaches to quantify minimum viable changes in biomarkers that may help reduce the individual risk of developing disease. The aim of this article is to develop a...

Descripción completa

Detalles Bibliográficos
Autores principales: Lenatti, Marta, Carlevaro, Alberto, Guergachi, Aziz, Keshavjee, Karim, Mongelli, Maurizio, Paglialonga, Alessia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9671330/
https://www.ncbi.nlm.nih.gov/pubmed/36395096
http://dx.doi.org/10.1371/journal.pone.0272825
_version_ 1784832519528513536
author Lenatti, Marta
Carlevaro, Alberto
Guergachi, Aziz
Keshavjee, Karim
Mongelli, Maurizio
Paglialonga, Alessia
author_facet Lenatti, Marta
Carlevaro, Alberto
Guergachi, Aziz
Keshavjee, Karim
Mongelli, Maurizio
Paglialonga, Alessia
author_sort Lenatti, Marta
collection PubMed
description Despite the growing availability of artificial intelligence models for predicting type 2 diabetes, there is still a lack of personalized approaches to quantify minimum viable changes in biomarkers that may help reduce the individual risk of developing disease. The aim of this article is to develop a new method, based on counterfactual explanations, to generate personalized recommendations to reduce the one-year risk of type 2 diabetes. Ten routinely collected biomarkers extracted from Electronic Medical Records of 2791 patients at low risk and 2791 patients at high risk of type 2 diabetes were analyzed. Two regions characterizing the two classes of patients were estimated using a Support Vector Data Description classifier. Counterfactual explanations (i.e., minimal changes in input features able to change the risk class) were generated for patients at high risk and evaluated using performance metrics (availability, validity, actionability, similarity, and discriminative power) and a qualitative survey administered to seven expert clinicians. Results showed that, on average, the requested minimum viable changes implied a significant reduction of fasting blood sugar, systolic blood pressure, and triglycerides and a significant increase of high-density lipoprotein in patients at risk of diabetes. A significant reduction in body mass index was also recommended in most of the patients at risk, except in females without hypertension. In general, greater changes were recommended in hypertensive patients compared to non-hypertensive ones. The experts were overall satisfied with the proposed approach although in some cases the proposed recommendations were deemed insufficient to reduce the risk in a clinically meaningful way. Future research will focus on a larger set of biomarkers and different comorbidities, also incorporating clinical guidelines whenever possible. Development of additional mathematical and clinical validation approaches will also be of paramount importance.
format Online
Article
Text
id pubmed-9671330
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-96713302022-11-18 A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations Lenatti, Marta Carlevaro, Alberto Guergachi, Aziz Keshavjee, Karim Mongelli, Maurizio Paglialonga, Alessia PLoS One Research Article Despite the growing availability of artificial intelligence models for predicting type 2 diabetes, there is still a lack of personalized approaches to quantify minimum viable changes in biomarkers that may help reduce the individual risk of developing disease. The aim of this article is to develop a new method, based on counterfactual explanations, to generate personalized recommendations to reduce the one-year risk of type 2 diabetes. Ten routinely collected biomarkers extracted from Electronic Medical Records of 2791 patients at low risk and 2791 patients at high risk of type 2 diabetes were analyzed. Two regions characterizing the two classes of patients were estimated using a Support Vector Data Description classifier. Counterfactual explanations (i.e., minimal changes in input features able to change the risk class) were generated for patients at high risk and evaluated using performance metrics (availability, validity, actionability, similarity, and discriminative power) and a qualitative survey administered to seven expert clinicians. Results showed that, on average, the requested minimum viable changes implied a significant reduction of fasting blood sugar, systolic blood pressure, and triglycerides and a significant increase of high-density lipoprotein in patients at risk of diabetes. A significant reduction in body mass index was also recommended in most of the patients at risk, except in females without hypertension. In general, greater changes were recommended in hypertensive patients compared to non-hypertensive ones. The experts were overall satisfied with the proposed approach although in some cases the proposed recommendations were deemed insufficient to reduce the risk in a clinically meaningful way. Future research will focus on a larger set of biomarkers and different comorbidities, also incorporating clinical guidelines whenever possible. Development of additional mathematical and clinical validation approaches will also be of paramount importance. Public Library of Science 2022-11-17 /pmc/articles/PMC9671330/ /pubmed/36395096 http://dx.doi.org/10.1371/journal.pone.0272825 Text en © 2022 Lenatti et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Lenatti, Marta
Carlevaro, Alberto
Guergachi, Aziz
Keshavjee, Karim
Mongelli, Maurizio
Paglialonga, Alessia
A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations
title A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations
title_full A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations
title_fullStr A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations
title_full_unstemmed A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations
title_short A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations
title_sort novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9671330/
https://www.ncbi.nlm.nih.gov/pubmed/36395096
http://dx.doi.org/10.1371/journal.pone.0272825
work_keys_str_mv AT lenattimarta anovelmethodtoderivepersonalizedminimumviablerecommendationsfortype2diabetespreventionbasedoncounterfactualexplanations
AT carlevaroalberto anovelmethodtoderivepersonalizedminimumviablerecommendationsfortype2diabetespreventionbasedoncounterfactualexplanations
AT guergachiaziz anovelmethodtoderivepersonalizedminimumviablerecommendationsfortype2diabetespreventionbasedoncounterfactualexplanations
AT keshavjeekarim anovelmethodtoderivepersonalizedminimumviablerecommendationsfortype2diabetespreventionbasedoncounterfactualexplanations
AT mongellimaurizio anovelmethodtoderivepersonalizedminimumviablerecommendationsfortype2diabetespreventionbasedoncounterfactualexplanations
AT paglialongaalessia anovelmethodtoderivepersonalizedminimumviablerecommendationsfortype2diabetespreventionbasedoncounterfactualexplanations
AT lenattimarta novelmethodtoderivepersonalizedminimumviablerecommendationsfortype2diabetespreventionbasedoncounterfactualexplanations
AT carlevaroalberto novelmethodtoderivepersonalizedminimumviablerecommendationsfortype2diabetespreventionbasedoncounterfactualexplanations
AT guergachiaziz novelmethodtoderivepersonalizedminimumviablerecommendationsfortype2diabetespreventionbasedoncounterfactualexplanations
AT keshavjeekarim novelmethodtoderivepersonalizedminimumviablerecommendationsfortype2diabetespreventionbasedoncounterfactualexplanations
AT mongellimaurizio novelmethodtoderivepersonalizedminimumviablerecommendationsfortype2diabetespreventionbasedoncounterfactualexplanations
AT paglialongaalessia novelmethodtoderivepersonalizedminimumviablerecommendationsfortype2diabetespreventionbasedoncounterfactualexplanations