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A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations
Despite the growing availability of artificial intelligence models for predicting type 2 diabetes, there is still a lack of personalized approaches to quantify minimum viable changes in biomarkers that may help reduce the individual risk of developing disease. The aim of this article is to develop a...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9671330/ https://www.ncbi.nlm.nih.gov/pubmed/36395096 http://dx.doi.org/10.1371/journal.pone.0272825 |
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author | Lenatti, Marta Carlevaro, Alberto Guergachi, Aziz Keshavjee, Karim Mongelli, Maurizio Paglialonga, Alessia |
author_facet | Lenatti, Marta Carlevaro, Alberto Guergachi, Aziz Keshavjee, Karim Mongelli, Maurizio Paglialonga, Alessia |
author_sort | Lenatti, Marta |
collection | PubMed |
description | Despite the growing availability of artificial intelligence models for predicting type 2 diabetes, there is still a lack of personalized approaches to quantify minimum viable changes in biomarkers that may help reduce the individual risk of developing disease. The aim of this article is to develop a new method, based on counterfactual explanations, to generate personalized recommendations to reduce the one-year risk of type 2 diabetes. Ten routinely collected biomarkers extracted from Electronic Medical Records of 2791 patients at low risk and 2791 patients at high risk of type 2 diabetes were analyzed. Two regions characterizing the two classes of patients were estimated using a Support Vector Data Description classifier. Counterfactual explanations (i.e., minimal changes in input features able to change the risk class) were generated for patients at high risk and evaluated using performance metrics (availability, validity, actionability, similarity, and discriminative power) and a qualitative survey administered to seven expert clinicians. Results showed that, on average, the requested minimum viable changes implied a significant reduction of fasting blood sugar, systolic blood pressure, and triglycerides and a significant increase of high-density lipoprotein in patients at risk of diabetes. A significant reduction in body mass index was also recommended in most of the patients at risk, except in females without hypertension. In general, greater changes were recommended in hypertensive patients compared to non-hypertensive ones. The experts were overall satisfied with the proposed approach although in some cases the proposed recommendations were deemed insufficient to reduce the risk in a clinically meaningful way. Future research will focus on a larger set of biomarkers and different comorbidities, also incorporating clinical guidelines whenever possible. Development of additional mathematical and clinical validation approaches will also be of paramount importance. |
format | Online Article Text |
id | pubmed-9671330 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-96713302022-11-18 A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations Lenatti, Marta Carlevaro, Alberto Guergachi, Aziz Keshavjee, Karim Mongelli, Maurizio Paglialonga, Alessia PLoS One Research Article Despite the growing availability of artificial intelligence models for predicting type 2 diabetes, there is still a lack of personalized approaches to quantify minimum viable changes in biomarkers that may help reduce the individual risk of developing disease. The aim of this article is to develop a new method, based on counterfactual explanations, to generate personalized recommendations to reduce the one-year risk of type 2 diabetes. Ten routinely collected biomarkers extracted from Electronic Medical Records of 2791 patients at low risk and 2791 patients at high risk of type 2 diabetes were analyzed. Two regions characterizing the two classes of patients were estimated using a Support Vector Data Description classifier. Counterfactual explanations (i.e., minimal changes in input features able to change the risk class) were generated for patients at high risk and evaluated using performance metrics (availability, validity, actionability, similarity, and discriminative power) and a qualitative survey administered to seven expert clinicians. Results showed that, on average, the requested minimum viable changes implied a significant reduction of fasting blood sugar, systolic blood pressure, and triglycerides and a significant increase of high-density lipoprotein in patients at risk of diabetes. A significant reduction in body mass index was also recommended in most of the patients at risk, except in females without hypertension. In general, greater changes were recommended in hypertensive patients compared to non-hypertensive ones. The experts were overall satisfied with the proposed approach although in some cases the proposed recommendations were deemed insufficient to reduce the risk in a clinically meaningful way. Future research will focus on a larger set of biomarkers and different comorbidities, also incorporating clinical guidelines whenever possible. Development of additional mathematical and clinical validation approaches will also be of paramount importance. Public Library of Science 2022-11-17 /pmc/articles/PMC9671330/ /pubmed/36395096 http://dx.doi.org/10.1371/journal.pone.0272825 Text en © 2022 Lenatti et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Lenatti, Marta Carlevaro, Alberto Guergachi, Aziz Keshavjee, Karim Mongelli, Maurizio Paglialonga, Alessia A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations |
title | A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations |
title_full | A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations |
title_fullStr | A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations |
title_full_unstemmed | A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations |
title_short | A novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations |
title_sort | novel method to derive personalized minimum viable recommendations for type 2 diabetes prevention based on counterfactual explanations |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9671330/ https://www.ncbi.nlm.nih.gov/pubmed/36395096 http://dx.doi.org/10.1371/journal.pone.0272825 |
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