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Dual_Pachi: Attention-based dual path framework with intermediate second order-pooling for Covid-19 detection from chest X-ray images
Numerous machine learning and image processing algorithms, most recently deep learning, allow the recognition and classification of COVID-19 disease in medical images. However, feature extraction, or the semantic gap between low-level visual information collected by imaging modalities and high-level...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier Ltd.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9671873/ https://www.ncbi.nlm.nih.gov/pubmed/36423531 http://dx.doi.org/10.1016/j.compbiomed.2022.106324 |
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author | Ukwuoma, Chiagoziem C. Qin, Zhiguang Agbesi, Victor K. Cobbinah, Bernard M. Yussif, Sophyani B. Abubakar, Hassan S. Lemessa, Bona D. |
author_facet | Ukwuoma, Chiagoziem C. Qin, Zhiguang Agbesi, Victor K. Cobbinah, Bernard M. Yussif, Sophyani B. Abubakar, Hassan S. Lemessa, Bona D. |
author_sort | Ukwuoma, Chiagoziem C. |
collection | PubMed |
description | Numerous machine learning and image processing algorithms, most recently deep learning, allow the recognition and classification of COVID-19 disease in medical images. However, feature extraction, or the semantic gap between low-level visual information collected by imaging modalities and high-level semantics, is the fundamental shortcoming of these techniques. On the other hand, several techniques focused on the first-order feature extraction of the chest X-Ray thus making the employed models less accurate and robust. This study presents Dual_Pachi: Attention Based Dual Path Framework with Intermediate Second Order-Pooling for more accurate and robust Chest X-ray feature extraction for Covid-19 detection. Dual_Pachi consists of 4 main building Blocks; Block one converts the received chest X-Ray image to CIE LAB coordinates (L & AB channels which are separated at the first three layers of a modified Inception V3 Architecture.). Block two further exploit the global features extracted from block one via a global second-order pooling while block three focuses on the low-level visual information and the high-level semantics of Chest X-ray image features using a multi-head self-attention and an MLP Layer without sacrificing performance. Finally, the fourth block is the classification block where classification is done using fully connected layers and SoftMax activation. Dual_Pachi is designed and trained in an end-to-end manner. According to the results, Dual_Pachi outperforms traditional deep learning models and other state-of-the-art approaches described in the literature with an accuracy of 0.96656 (Data_A) and 0.97867 (Data_B) for the Dual_Pachi approach and an accuracy of 0.95987 (Data_A) and 0.968 (Data_B) for the Dual_Pachi without attention block model. A Grad-CAM-based visualization is also built to highlight where the applied attention mechanism is concentrated. |
format | Online Article Text |
id | pubmed-9671873 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96718732022-11-18 Dual_Pachi: Attention-based dual path framework with intermediate second order-pooling for Covid-19 detection from chest X-ray images Ukwuoma, Chiagoziem C. Qin, Zhiguang Agbesi, Victor K. Cobbinah, Bernard M. Yussif, Sophyani B. Abubakar, Hassan S. Lemessa, Bona D. Comput Biol Med Article Numerous machine learning and image processing algorithms, most recently deep learning, allow the recognition and classification of COVID-19 disease in medical images. However, feature extraction, or the semantic gap between low-level visual information collected by imaging modalities and high-level semantics, is the fundamental shortcoming of these techniques. On the other hand, several techniques focused on the first-order feature extraction of the chest X-Ray thus making the employed models less accurate and robust. This study presents Dual_Pachi: Attention Based Dual Path Framework with Intermediate Second Order-Pooling for more accurate and robust Chest X-ray feature extraction for Covid-19 detection. Dual_Pachi consists of 4 main building Blocks; Block one converts the received chest X-Ray image to CIE LAB coordinates (L & AB channels which are separated at the first three layers of a modified Inception V3 Architecture.). Block two further exploit the global features extracted from block one via a global second-order pooling while block three focuses on the low-level visual information and the high-level semantics of Chest X-ray image features using a multi-head self-attention and an MLP Layer without sacrificing performance. Finally, the fourth block is the classification block where classification is done using fully connected layers and SoftMax activation. Dual_Pachi is designed and trained in an end-to-end manner. According to the results, Dual_Pachi outperforms traditional deep learning models and other state-of-the-art approaches described in the literature with an accuracy of 0.96656 (Data_A) and 0.97867 (Data_B) for the Dual_Pachi approach and an accuracy of 0.95987 (Data_A) and 0.968 (Data_B) for the Dual_Pachi without attention block model. A Grad-CAM-based visualization is also built to highlight where the applied attention mechanism is concentrated. Elsevier Ltd. 2022-12 2022-11-18 /pmc/articles/PMC9671873/ /pubmed/36423531 http://dx.doi.org/10.1016/j.compbiomed.2022.106324 Text en © 2022 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Ukwuoma, Chiagoziem C. Qin, Zhiguang Agbesi, Victor K. Cobbinah, Bernard M. Yussif, Sophyani B. Abubakar, Hassan S. Lemessa, Bona D. Dual_Pachi: Attention-based dual path framework with intermediate second order-pooling for Covid-19 detection from chest X-ray images |
title | Dual_Pachi: Attention-based dual path framework with intermediate second order-pooling for Covid-19 detection from chest X-ray images |
title_full | Dual_Pachi: Attention-based dual path framework with intermediate second order-pooling for Covid-19 detection from chest X-ray images |
title_fullStr | Dual_Pachi: Attention-based dual path framework with intermediate second order-pooling for Covid-19 detection from chest X-ray images |
title_full_unstemmed | Dual_Pachi: Attention-based dual path framework with intermediate second order-pooling for Covid-19 detection from chest X-ray images |
title_short | Dual_Pachi: Attention-based dual path framework with intermediate second order-pooling for Covid-19 detection from chest X-ray images |
title_sort | dual_pachi: attention-based dual path framework with intermediate second order-pooling for covid-19 detection from chest x-ray images |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9671873/ https://www.ncbi.nlm.nih.gov/pubmed/36423531 http://dx.doi.org/10.1016/j.compbiomed.2022.106324 |
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