Cargando…

Construction of a ceRNA network in polycystic ovary syndrome (PCOS) driven by exosomal lncRNA

Polycystic ovary syndrome (PCOS), a common and frustrating syndrome in women of reproductive age, is characterized by symptoms including hyperandrogenemia, ovulation dysfunction, and polycystic ovaries. The role of competitive endogenous RNA (ceRNA) networks is receiving increasing attention and has...

Descripción completa

Detalles Bibliográficos
Autores principales: Bai, Lilian, Gong, Junxing, Guo, Yanyan, Li, Yuchen, Huang, Hefeng, Liu, Xinmei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9672461/
https://www.ncbi.nlm.nih.gov/pubmed/36406137
http://dx.doi.org/10.3389/fgene.2022.979924
_version_ 1784832740269490176
author Bai, Lilian
Gong, Junxing
Guo, Yanyan
Li, Yuchen
Huang, Hefeng
Liu, Xinmei
author_facet Bai, Lilian
Gong, Junxing
Guo, Yanyan
Li, Yuchen
Huang, Hefeng
Liu, Xinmei
author_sort Bai, Lilian
collection PubMed
description Polycystic ovary syndrome (PCOS), a common and frustrating syndrome in women of reproductive age, is characterized by symptoms including hyperandrogenemia, ovulation dysfunction, and polycystic ovaries. The role of competitive endogenous RNA (ceRNA) networks is receiving increasing attention and has been reported in multiple complicated diseases, such as various carcinomas, endometriosis, and tubal factor infertility. However, the association of ceRNA networks with the pathogenesis of PCOS remains unclear. This study aimed to construct a ceRNA network orchestrated by exosomal lnRNA and circRNA in PCOS. We screened RNA data of 34 samples from the Gene Expression Omnibus (GEO) database for differentially expressed lncRNAs (DELs), miRNAs (DEMs), mRNAs (DEGs), and circRNA associated with the progression of PCOS (PCOS, n = 17 vs. normal, n = 17). A protein–protein interaction (PPI) network, gene set enrichment analysis (GSEA), and Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were conducted. Importantly, the function of the ceRNA network was explored using GO and KEGG enrichment analyses. We identified 46 DELs (25 upregulated and 21 downregulated), 31 DEMs (20 upregulated and 11 downregulated), 165 DEGs (52 upregulated and 113 downregulated), and 1 differentially expressed circRNA. The PPI network had 79 nodes and 112 edges. The GSEA results showed that these genes were mainly related to oxidative phosphorylation; TNF signaling pathways; and valine, leucine, and isoleucine degradation. GO and KEGG analyses revealed that the DEGs were significantly enriched in lipid metabolism, peroxisome proliferator-activated receptor (PPAR) signaling pathways, and fatty acid metabolism. Additionally, we constructed a novel PCOS-associated lncRNA–miRNA–mRNA ceRNA triple network and a circRNA-related network. Thereafter, we described the potential roles played by follicular fluid exosomes in PCOS. Our present study describes the molecular pathogenesis of PCOS in human ovarian granulosa cells at the post-transcriptional level, which provides new insights for the clinical diagnosis and treatment of PCOS and further scientific research.
format Online
Article
Text
id pubmed-9672461
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-96724612022-11-19 Construction of a ceRNA network in polycystic ovary syndrome (PCOS) driven by exosomal lncRNA Bai, Lilian Gong, Junxing Guo, Yanyan Li, Yuchen Huang, Hefeng Liu, Xinmei Front Genet Genetics Polycystic ovary syndrome (PCOS), a common and frustrating syndrome in women of reproductive age, is characterized by symptoms including hyperandrogenemia, ovulation dysfunction, and polycystic ovaries. The role of competitive endogenous RNA (ceRNA) networks is receiving increasing attention and has been reported in multiple complicated diseases, such as various carcinomas, endometriosis, and tubal factor infertility. However, the association of ceRNA networks with the pathogenesis of PCOS remains unclear. This study aimed to construct a ceRNA network orchestrated by exosomal lnRNA and circRNA in PCOS. We screened RNA data of 34 samples from the Gene Expression Omnibus (GEO) database for differentially expressed lncRNAs (DELs), miRNAs (DEMs), mRNAs (DEGs), and circRNA associated with the progression of PCOS (PCOS, n = 17 vs. normal, n = 17). A protein–protein interaction (PPI) network, gene set enrichment analysis (GSEA), and Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were conducted. Importantly, the function of the ceRNA network was explored using GO and KEGG enrichment analyses. We identified 46 DELs (25 upregulated and 21 downregulated), 31 DEMs (20 upregulated and 11 downregulated), 165 DEGs (52 upregulated and 113 downregulated), and 1 differentially expressed circRNA. The PPI network had 79 nodes and 112 edges. The GSEA results showed that these genes were mainly related to oxidative phosphorylation; TNF signaling pathways; and valine, leucine, and isoleucine degradation. GO and KEGG analyses revealed that the DEGs were significantly enriched in lipid metabolism, peroxisome proliferator-activated receptor (PPAR) signaling pathways, and fatty acid metabolism. Additionally, we constructed a novel PCOS-associated lncRNA–miRNA–mRNA ceRNA triple network and a circRNA-related network. Thereafter, we described the potential roles played by follicular fluid exosomes in PCOS. Our present study describes the molecular pathogenesis of PCOS in human ovarian granulosa cells at the post-transcriptional level, which provides new insights for the clinical diagnosis and treatment of PCOS and further scientific research. Frontiers Media S.A. 2022-11-04 /pmc/articles/PMC9672461/ /pubmed/36406137 http://dx.doi.org/10.3389/fgene.2022.979924 Text en Copyright © 2022 Bai, Gong, Guo, Li, Huang and Liu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Bai, Lilian
Gong, Junxing
Guo, Yanyan
Li, Yuchen
Huang, Hefeng
Liu, Xinmei
Construction of a ceRNA network in polycystic ovary syndrome (PCOS) driven by exosomal lncRNA
title Construction of a ceRNA network in polycystic ovary syndrome (PCOS) driven by exosomal lncRNA
title_full Construction of a ceRNA network in polycystic ovary syndrome (PCOS) driven by exosomal lncRNA
title_fullStr Construction of a ceRNA network in polycystic ovary syndrome (PCOS) driven by exosomal lncRNA
title_full_unstemmed Construction of a ceRNA network in polycystic ovary syndrome (PCOS) driven by exosomal lncRNA
title_short Construction of a ceRNA network in polycystic ovary syndrome (PCOS) driven by exosomal lncRNA
title_sort construction of a cerna network in polycystic ovary syndrome (pcos) driven by exosomal lncrna
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9672461/
https://www.ncbi.nlm.nih.gov/pubmed/36406137
http://dx.doi.org/10.3389/fgene.2022.979924
work_keys_str_mv AT baililian constructionofacernanetworkinpolycysticovarysyndromepcosdrivenbyexosomallncrna
AT gongjunxing constructionofacernanetworkinpolycysticovarysyndromepcosdrivenbyexosomallncrna
AT guoyanyan constructionofacernanetworkinpolycysticovarysyndromepcosdrivenbyexosomallncrna
AT liyuchen constructionofacernanetworkinpolycysticovarysyndromepcosdrivenbyexosomallncrna
AT huanghefeng constructionofacernanetworkinpolycysticovarysyndromepcosdrivenbyexosomallncrna
AT liuxinmei constructionofacernanetworkinpolycysticovarysyndromepcosdrivenbyexosomallncrna