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Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins

African swine fever (ASF) is a contagious and lethal hemorrhagic disease in pigs; its spread results in huge economic losses to the global pig industry. ASF virus (ASFV) is a large double-stranded DNA virus encoding >150 open reading frames. Among them, ASFV-encoded D1133L was predicted to be a h...

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Autores principales: Hao, Yu, Yang, Jinke, Yang, Bo, Zhang, Ting, Shi, Xijuan, Yang, Xing, Zhang, Dajun, Zhao, Dengshuai, Yan, Wenqian, Chen, Lingling, Liu, Xiangtao, Zheng, Haixue, Zhang, Keshan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9673173/
https://www.ncbi.nlm.nih.gov/pubmed/36406406
http://dx.doi.org/10.3389/fmicb.2022.1037346
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author Hao, Yu
Yang, Jinke
Yang, Bo
Zhang, Ting
Shi, Xijuan
Yang, Xing
Zhang, Dajun
Zhao, Dengshuai
Yan, Wenqian
Chen, Lingling
Liu, Xiangtao
Zheng, Haixue
Zhang, Keshan
author_facet Hao, Yu
Yang, Jinke
Yang, Bo
Zhang, Ting
Shi, Xijuan
Yang, Xing
Zhang, Dajun
Zhao, Dengshuai
Yan, Wenqian
Chen, Lingling
Liu, Xiangtao
Zheng, Haixue
Zhang, Keshan
author_sort Hao, Yu
collection PubMed
description African swine fever (ASF) is a contagious and lethal hemorrhagic disease in pigs; its spread results in huge economic losses to the global pig industry. ASF virus (ASFV) is a large double-stranded DNA virus encoding >150 open reading frames. Among them, ASFV-encoded D1133L was predicted to be a helicase but its specific function remains unknown. Since virus-host protein interactions are key to understanding viral protein function, we used co-immunoprecipitation combined with liquid chromatography-mass spectrometry to investigate D1133L. This study describes the interaction network of ASFV D1133L protein in porcine kidney PK-15 cells. Overall, 1,471 host proteins that potentially interact with D1133L are identified. Based on these host proteins, a protein–protein network was constructed. Gene ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses showed that cellular D1133L-interacted proteins are involved in the ribosome, spliceosome, RNA transport, oxidative phosphorylation, proteasome, and DNA replication. Vimentin (VIM), tripartite motif-containing protein 21 (TRIM21), and Tu translation elongation factor (TUFM) were confirmed to interact with D1133L in vitro. VIM or TRIM21 overexpression significantly promoted ASFV replication, but TUFM overexpression significantly inhibited ASFV replication. These results help elucidate the specific functions of D1133L and the potential mechanisms underlying ASFV replication.
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spelling pubmed-96731732022-11-19 Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins Hao, Yu Yang, Jinke Yang, Bo Zhang, Ting Shi, Xijuan Yang, Xing Zhang, Dajun Zhao, Dengshuai Yan, Wenqian Chen, Lingling Liu, Xiangtao Zheng, Haixue Zhang, Keshan Front Microbiol Microbiology African swine fever (ASF) is a contagious and lethal hemorrhagic disease in pigs; its spread results in huge economic losses to the global pig industry. ASF virus (ASFV) is a large double-stranded DNA virus encoding >150 open reading frames. Among them, ASFV-encoded D1133L was predicted to be a helicase but its specific function remains unknown. Since virus-host protein interactions are key to understanding viral protein function, we used co-immunoprecipitation combined with liquid chromatography-mass spectrometry to investigate D1133L. This study describes the interaction network of ASFV D1133L protein in porcine kidney PK-15 cells. Overall, 1,471 host proteins that potentially interact with D1133L are identified. Based on these host proteins, a protein–protein network was constructed. Gene ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses showed that cellular D1133L-interacted proteins are involved in the ribosome, spliceosome, RNA transport, oxidative phosphorylation, proteasome, and DNA replication. Vimentin (VIM), tripartite motif-containing protein 21 (TRIM21), and Tu translation elongation factor (TUFM) were confirmed to interact with D1133L in vitro. VIM or TRIM21 overexpression significantly promoted ASFV replication, but TUFM overexpression significantly inhibited ASFV replication. These results help elucidate the specific functions of D1133L and the potential mechanisms underlying ASFV replication. Frontiers Media S.A. 2022-11-03 /pmc/articles/PMC9673173/ /pubmed/36406406 http://dx.doi.org/10.3389/fmicb.2022.1037346 Text en Copyright © 2022 Hao, Yang, Yang, Zhang, Shi, Yang, Zhang, Zhao, Yan, Chen, Liu, Zheng and Zhang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Hao, Yu
Yang, Jinke
Yang, Bo
Zhang, Ting
Shi, Xijuan
Yang, Xing
Zhang, Dajun
Zhao, Dengshuai
Yan, Wenqian
Chen, Lingling
Liu, Xiangtao
Zheng, Haixue
Zhang, Keshan
Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins
title Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins
title_full Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins
title_fullStr Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins
title_full_unstemmed Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins
title_short Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins
title_sort identification and analysis of the interaction network of african swine fever virus d1133l with host proteins
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9673173/
https://www.ncbi.nlm.nih.gov/pubmed/36406406
http://dx.doi.org/10.3389/fmicb.2022.1037346
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