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Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins
African swine fever (ASF) is a contagious and lethal hemorrhagic disease in pigs; its spread results in huge economic losses to the global pig industry. ASF virus (ASFV) is a large double-stranded DNA virus encoding >150 open reading frames. Among them, ASFV-encoded D1133L was predicted to be a h...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9673173/ https://www.ncbi.nlm.nih.gov/pubmed/36406406 http://dx.doi.org/10.3389/fmicb.2022.1037346 |
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author | Hao, Yu Yang, Jinke Yang, Bo Zhang, Ting Shi, Xijuan Yang, Xing Zhang, Dajun Zhao, Dengshuai Yan, Wenqian Chen, Lingling Liu, Xiangtao Zheng, Haixue Zhang, Keshan |
author_facet | Hao, Yu Yang, Jinke Yang, Bo Zhang, Ting Shi, Xijuan Yang, Xing Zhang, Dajun Zhao, Dengshuai Yan, Wenqian Chen, Lingling Liu, Xiangtao Zheng, Haixue Zhang, Keshan |
author_sort | Hao, Yu |
collection | PubMed |
description | African swine fever (ASF) is a contagious and lethal hemorrhagic disease in pigs; its spread results in huge economic losses to the global pig industry. ASF virus (ASFV) is a large double-stranded DNA virus encoding >150 open reading frames. Among them, ASFV-encoded D1133L was predicted to be a helicase but its specific function remains unknown. Since virus-host protein interactions are key to understanding viral protein function, we used co-immunoprecipitation combined with liquid chromatography-mass spectrometry to investigate D1133L. This study describes the interaction network of ASFV D1133L protein in porcine kidney PK-15 cells. Overall, 1,471 host proteins that potentially interact with D1133L are identified. Based on these host proteins, a protein–protein network was constructed. Gene ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses showed that cellular D1133L-interacted proteins are involved in the ribosome, spliceosome, RNA transport, oxidative phosphorylation, proteasome, and DNA replication. Vimentin (VIM), tripartite motif-containing protein 21 (TRIM21), and Tu translation elongation factor (TUFM) were confirmed to interact with D1133L in vitro. VIM or TRIM21 overexpression significantly promoted ASFV replication, but TUFM overexpression significantly inhibited ASFV replication. These results help elucidate the specific functions of D1133L and the potential mechanisms underlying ASFV replication. |
format | Online Article Text |
id | pubmed-9673173 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96731732022-11-19 Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins Hao, Yu Yang, Jinke Yang, Bo Zhang, Ting Shi, Xijuan Yang, Xing Zhang, Dajun Zhao, Dengshuai Yan, Wenqian Chen, Lingling Liu, Xiangtao Zheng, Haixue Zhang, Keshan Front Microbiol Microbiology African swine fever (ASF) is a contagious and lethal hemorrhagic disease in pigs; its spread results in huge economic losses to the global pig industry. ASF virus (ASFV) is a large double-stranded DNA virus encoding >150 open reading frames. Among them, ASFV-encoded D1133L was predicted to be a helicase but its specific function remains unknown. Since virus-host protein interactions are key to understanding viral protein function, we used co-immunoprecipitation combined with liquid chromatography-mass spectrometry to investigate D1133L. This study describes the interaction network of ASFV D1133L protein in porcine kidney PK-15 cells. Overall, 1,471 host proteins that potentially interact with D1133L are identified. Based on these host proteins, a protein–protein network was constructed. Gene ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses showed that cellular D1133L-interacted proteins are involved in the ribosome, spliceosome, RNA transport, oxidative phosphorylation, proteasome, and DNA replication. Vimentin (VIM), tripartite motif-containing protein 21 (TRIM21), and Tu translation elongation factor (TUFM) were confirmed to interact with D1133L in vitro. VIM or TRIM21 overexpression significantly promoted ASFV replication, but TUFM overexpression significantly inhibited ASFV replication. These results help elucidate the specific functions of D1133L and the potential mechanisms underlying ASFV replication. Frontiers Media S.A. 2022-11-03 /pmc/articles/PMC9673173/ /pubmed/36406406 http://dx.doi.org/10.3389/fmicb.2022.1037346 Text en Copyright © 2022 Hao, Yang, Yang, Zhang, Shi, Yang, Zhang, Zhao, Yan, Chen, Liu, Zheng and Zhang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Hao, Yu Yang, Jinke Yang, Bo Zhang, Ting Shi, Xijuan Yang, Xing Zhang, Dajun Zhao, Dengshuai Yan, Wenqian Chen, Lingling Liu, Xiangtao Zheng, Haixue Zhang, Keshan Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins |
title | Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins |
title_full | Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins |
title_fullStr | Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins |
title_full_unstemmed | Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins |
title_short | Identification and analysis of the interaction network of African swine fever virus D1133L with host proteins |
title_sort | identification and analysis of the interaction network of african swine fever virus d1133l with host proteins |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9673173/ https://www.ncbi.nlm.nih.gov/pubmed/36406406 http://dx.doi.org/10.3389/fmicb.2022.1037346 |
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