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Integration of CRISPR/Cas9 with artificial intelligence for improved cancer therapeutics

Gene editing has great potential in treating diseases caused by well-characterized molecular alterations. The introduction of clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9)–based gene-editing tools has substantially improved the precision and ef...

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Autores principales: Bhat, Ajaz A., Nisar, Sabah, Mukherjee, Soumi, Saha, Nirmalya, Yarravarapu, Nageswari, Lone, Saife N., Masoodi, Tariq, Chauhan, Ravi, Maacha, Selma, Bagga, Puneet, Dhawan, Punita, Akil, Ammira Al-Shabeeb, El-Rifai, Wael, Uddin, Shahab, Reddy, Ravinder, Singh, Mayank, Macha, Muzafar A., Haris, Mohammad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9673220/
https://www.ncbi.nlm.nih.gov/pubmed/36401282
http://dx.doi.org/10.1186/s12967-022-03765-1
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author Bhat, Ajaz A.
Nisar, Sabah
Mukherjee, Soumi
Saha, Nirmalya
Yarravarapu, Nageswari
Lone, Saife N.
Masoodi, Tariq
Chauhan, Ravi
Maacha, Selma
Bagga, Puneet
Dhawan, Punita
Akil, Ammira Al-Shabeeb
El-Rifai, Wael
Uddin, Shahab
Reddy, Ravinder
Singh, Mayank
Macha, Muzafar A.
Haris, Mohammad
author_facet Bhat, Ajaz A.
Nisar, Sabah
Mukherjee, Soumi
Saha, Nirmalya
Yarravarapu, Nageswari
Lone, Saife N.
Masoodi, Tariq
Chauhan, Ravi
Maacha, Selma
Bagga, Puneet
Dhawan, Punita
Akil, Ammira Al-Shabeeb
El-Rifai, Wael
Uddin, Shahab
Reddy, Ravinder
Singh, Mayank
Macha, Muzafar A.
Haris, Mohammad
author_sort Bhat, Ajaz A.
collection PubMed
description Gene editing has great potential in treating diseases caused by well-characterized molecular alterations. The introduction of clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9)–based gene-editing tools has substantially improved the precision and efficiency of gene editing. The CRISPR/Cas9 system offers several advantages over the existing gene-editing approaches, such as its ability to target practically any genomic sequence, enabling the rapid development and deployment of novel CRISPR-mediated knock-out/knock-in methods. CRISPR/Cas9 has been widely used to develop cancer models, validate essential genes as druggable targets, study drug-resistance mechanisms, explore gene non-coding areas, and develop biomarkers. CRISPR gene editing can create more-effective chimeric antigen receptor (CAR)-T cells that are durable, cost-effective, and more readily available. However, further research is needed to define the CRISPR/Cas9 system’s pros and cons, establish best practices, and determine social and ethical implications. This review summarizes recent CRISPR/Cas9 developments, particularly in cancer research and immunotherapy, and the potential of CRISPR/Cas9-based screening in developing cancer precision medicine and engineering models for targeted cancer therapy, highlighting the existing challenges and future directions. Lastly, we highlight the role of artificial intelligence in refining the CRISPR system's on-target and off-target effects, a critical factor for the broader application in cancer therapeutics.
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spelling pubmed-96732202022-11-18 Integration of CRISPR/Cas9 with artificial intelligence for improved cancer therapeutics Bhat, Ajaz A. Nisar, Sabah Mukherjee, Soumi Saha, Nirmalya Yarravarapu, Nageswari Lone, Saife N. Masoodi, Tariq Chauhan, Ravi Maacha, Selma Bagga, Puneet Dhawan, Punita Akil, Ammira Al-Shabeeb El-Rifai, Wael Uddin, Shahab Reddy, Ravinder Singh, Mayank Macha, Muzafar A. Haris, Mohammad J Transl Med Review Gene editing has great potential in treating diseases caused by well-characterized molecular alterations. The introduction of clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9)–based gene-editing tools has substantially improved the precision and efficiency of gene editing. The CRISPR/Cas9 system offers several advantages over the existing gene-editing approaches, such as its ability to target practically any genomic sequence, enabling the rapid development and deployment of novel CRISPR-mediated knock-out/knock-in methods. CRISPR/Cas9 has been widely used to develop cancer models, validate essential genes as druggable targets, study drug-resistance mechanisms, explore gene non-coding areas, and develop biomarkers. CRISPR gene editing can create more-effective chimeric antigen receptor (CAR)-T cells that are durable, cost-effective, and more readily available. However, further research is needed to define the CRISPR/Cas9 system’s pros and cons, establish best practices, and determine social and ethical implications. This review summarizes recent CRISPR/Cas9 developments, particularly in cancer research and immunotherapy, and the potential of CRISPR/Cas9-based screening in developing cancer precision medicine and engineering models for targeted cancer therapy, highlighting the existing challenges and future directions. Lastly, we highlight the role of artificial intelligence in refining the CRISPR system's on-target and off-target effects, a critical factor for the broader application in cancer therapeutics. BioMed Central 2022-11-18 /pmc/articles/PMC9673220/ /pubmed/36401282 http://dx.doi.org/10.1186/s12967-022-03765-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Review
Bhat, Ajaz A.
Nisar, Sabah
Mukherjee, Soumi
Saha, Nirmalya
Yarravarapu, Nageswari
Lone, Saife N.
Masoodi, Tariq
Chauhan, Ravi
Maacha, Selma
Bagga, Puneet
Dhawan, Punita
Akil, Ammira Al-Shabeeb
El-Rifai, Wael
Uddin, Shahab
Reddy, Ravinder
Singh, Mayank
Macha, Muzafar A.
Haris, Mohammad
Integration of CRISPR/Cas9 with artificial intelligence for improved cancer therapeutics
title Integration of CRISPR/Cas9 with artificial intelligence for improved cancer therapeutics
title_full Integration of CRISPR/Cas9 with artificial intelligence for improved cancer therapeutics
title_fullStr Integration of CRISPR/Cas9 with artificial intelligence for improved cancer therapeutics
title_full_unstemmed Integration of CRISPR/Cas9 with artificial intelligence for improved cancer therapeutics
title_short Integration of CRISPR/Cas9 with artificial intelligence for improved cancer therapeutics
title_sort integration of crispr/cas9 with artificial intelligence for improved cancer therapeutics
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9673220/
https://www.ncbi.nlm.nih.gov/pubmed/36401282
http://dx.doi.org/10.1186/s12967-022-03765-1
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