Cargando…
A Homogeneous Ensemble of Robust Pre-defined Neural Network Enables Automated Annotation of Human Embryo Morphokinetics
BACKGROUND: The purpose of the current study was to reduce the risk of human bias in assessing embryos by automatically annotating embryonic development based on their morphological changes at specified time-points with convolutional neural network (CNN) and artificial intelligence (AI). METHODS: Ti...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Avicenna Research Institute
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9674456/ https://www.ncbi.nlm.nih.gov/pubmed/36452194 http://dx.doi.org/10.18502/jri.v23i4.10809 |
_version_ | 1784833156453498880 |
---|---|
author | Danardono, Gunawan B. Erwin, Alva Purnama, James Handayani, Nining Polim, Arie A. Boediono, Arief Sini, Ivan |
author_facet | Danardono, Gunawan B. Erwin, Alva Purnama, James Handayani, Nining Polim, Arie A. Boediono, Arief Sini, Ivan |
author_sort | Danardono, Gunawan B. |
collection | PubMed |
description | BACKGROUND: The purpose of the current study was to reduce the risk of human bias in assessing embryos by automatically annotating embryonic development based on their morphological changes at specified time-points with convolutional neural network (CNN) and artificial intelligence (AI). METHODS: Time-lapse videos of embryo development were manually annotated by the embryologist and extracted for use as a supervised dataset, where the data were split into 14 unique classifications based on morphological differences. A compilation of homogeneous pre-trained CNN models obtained via TensorFlow Hub was tested with various hyperparameters on a controlled environment using transfer learning to create a new model. Subsequently, the performances of the AI models in correctly annotating embryo morphologies within the 14 designated classifications were compared with a collection of AI models with different built-in configurations so as to derive a model with the highest accuracy. RESULTS: Eventually, an AI model with a specific configuration and an accuracy score of 67.68% was obtained, capable of predicting the embryo developmental stages (t1, t2, t3, t4, t5, t6, t7, t8, t9+, tCompaction, tM, tSB, tB, tEB). CONCLUSION: Currently, the technology and research of artificial intelligence and machine learning in the medical field have significantly and continuingly progressed in an effort to develop computer-assisted technology which could potentially increase the efficiency and accuracy of medical personnel’s performance. Nonetheless, building AI models with larger data is required to properly increase AI model reliability. |
format | Online Article Text |
id | pubmed-9674456 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Avicenna Research Institute |
record_format | MEDLINE/PubMed |
spelling | pubmed-96744562022-11-29 A Homogeneous Ensemble of Robust Pre-defined Neural Network Enables Automated Annotation of Human Embryo Morphokinetics Danardono, Gunawan B. Erwin, Alva Purnama, James Handayani, Nining Polim, Arie A. Boediono, Arief Sini, Ivan J Reprod Infertil Original Article BACKGROUND: The purpose of the current study was to reduce the risk of human bias in assessing embryos by automatically annotating embryonic development based on their morphological changes at specified time-points with convolutional neural network (CNN) and artificial intelligence (AI). METHODS: Time-lapse videos of embryo development were manually annotated by the embryologist and extracted for use as a supervised dataset, where the data were split into 14 unique classifications based on morphological differences. A compilation of homogeneous pre-trained CNN models obtained via TensorFlow Hub was tested with various hyperparameters on a controlled environment using transfer learning to create a new model. Subsequently, the performances of the AI models in correctly annotating embryo morphologies within the 14 designated classifications were compared with a collection of AI models with different built-in configurations so as to derive a model with the highest accuracy. RESULTS: Eventually, an AI model with a specific configuration and an accuracy score of 67.68% was obtained, capable of predicting the embryo developmental stages (t1, t2, t3, t4, t5, t6, t7, t8, t9+, tCompaction, tM, tSB, tB, tEB). CONCLUSION: Currently, the technology and research of artificial intelligence and machine learning in the medical field have significantly and continuingly progressed in an effort to develop computer-assisted technology which could potentially increase the efficiency and accuracy of medical personnel’s performance. Nonetheless, building AI models with larger data is required to properly increase AI model reliability. Avicenna Research Institute 2022 /pmc/articles/PMC9674456/ /pubmed/36452194 http://dx.doi.org/10.18502/jri.v23i4.10809 Text en Copyright© 2022, Avicenna Research Institute. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) |
spellingShingle | Original Article Danardono, Gunawan B. Erwin, Alva Purnama, James Handayani, Nining Polim, Arie A. Boediono, Arief Sini, Ivan A Homogeneous Ensemble of Robust Pre-defined Neural Network Enables Automated Annotation of Human Embryo Morphokinetics |
title | A Homogeneous Ensemble of Robust Pre-defined Neural Network Enables Automated Annotation of Human Embryo Morphokinetics |
title_full | A Homogeneous Ensemble of Robust Pre-defined Neural Network Enables Automated Annotation of Human Embryo Morphokinetics |
title_fullStr | A Homogeneous Ensemble of Robust Pre-defined Neural Network Enables Automated Annotation of Human Embryo Morphokinetics |
title_full_unstemmed | A Homogeneous Ensemble of Robust Pre-defined Neural Network Enables Automated Annotation of Human Embryo Morphokinetics |
title_short | A Homogeneous Ensemble of Robust Pre-defined Neural Network Enables Automated Annotation of Human Embryo Morphokinetics |
title_sort | homogeneous ensemble of robust pre-defined neural network enables automated annotation of human embryo morphokinetics |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9674456/ https://www.ncbi.nlm.nih.gov/pubmed/36452194 http://dx.doi.org/10.18502/jri.v23i4.10809 |
work_keys_str_mv | AT danardonogunawanb ahomogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics AT erwinalva ahomogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics AT purnamajames ahomogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics AT handayaninining ahomogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics AT polimariea ahomogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics AT boedionoarief ahomogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics AT siniivan ahomogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics AT danardonogunawanb homogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics AT erwinalva homogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics AT purnamajames homogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics AT handayaninining homogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics AT polimariea homogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics AT boedionoarief homogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics AT siniivan homogeneousensembleofrobustpredefinedneuralnetworkenablesautomatedannotationofhumanembryomorphokinetics |