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Identification of key biomarkers for STAD using filter feature selection approaches
Gastric cancer (GC) is the fifth most common cancer and the third leading cause of cancer death worldwide. Discovery of diagnostic biomarkers prompts the early detection of GC. In this study, we used limma method combined with joint mutual information (JMI), a machine learning algorithm, to identify...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9674689/ https://www.ncbi.nlm.nih.gov/pubmed/36400805 http://dx.doi.org/10.1038/s41598-022-21760-w |
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author | Wang, Yangyang Wang, Jihan Hu, Ya Shangguan, Jingbo Song, Qiying Xu, Jing Wang, Hanping Xue, Mengju Wang, Liping Zhang, Yuanyuan |
author_facet | Wang, Yangyang Wang, Jihan Hu, Ya Shangguan, Jingbo Song, Qiying Xu, Jing Wang, Hanping Xue, Mengju Wang, Liping Zhang, Yuanyuan |
author_sort | Wang, Yangyang |
collection | PubMed |
description | Gastric cancer (GC) is the fifth most common cancer and the third leading cause of cancer death worldwide. Discovery of diagnostic biomarkers prompts the early detection of GC. In this study, we used limma method combined with joint mutual information (JMI), a machine learning algorithm, to identify a signature of 11 genes that performed well in distinguishing tumor and normal samples in a stomach adenocarcinoma cohort. Other two GC datasets were used to validate the classifying performances. Several of the candidate genes were correlated with GC tumor progression and survival. Overall, we highlight the application of feature selection approaches in the analysis of high-dimensional biological data, which will improve study accuracies and reduce workloads for the researchers when identifying potential tumor biomarkers. |
format | Online Article Text |
id | pubmed-9674689 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-96746892022-11-20 Identification of key biomarkers for STAD using filter feature selection approaches Wang, Yangyang Wang, Jihan Hu, Ya Shangguan, Jingbo Song, Qiying Xu, Jing Wang, Hanping Xue, Mengju Wang, Liping Zhang, Yuanyuan Sci Rep Article Gastric cancer (GC) is the fifth most common cancer and the third leading cause of cancer death worldwide. Discovery of diagnostic biomarkers prompts the early detection of GC. In this study, we used limma method combined with joint mutual information (JMI), a machine learning algorithm, to identify a signature of 11 genes that performed well in distinguishing tumor and normal samples in a stomach adenocarcinoma cohort. Other two GC datasets were used to validate the classifying performances. Several of the candidate genes were correlated with GC tumor progression and survival. Overall, we highlight the application of feature selection approaches in the analysis of high-dimensional biological data, which will improve study accuracies and reduce workloads for the researchers when identifying potential tumor biomarkers. Nature Publishing Group UK 2022-11-18 /pmc/articles/PMC9674689/ /pubmed/36400805 http://dx.doi.org/10.1038/s41598-022-21760-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Wang, Yangyang Wang, Jihan Hu, Ya Shangguan, Jingbo Song, Qiying Xu, Jing Wang, Hanping Xue, Mengju Wang, Liping Zhang, Yuanyuan Identification of key biomarkers for STAD using filter feature selection approaches |
title | Identification of key biomarkers for STAD using filter feature selection approaches |
title_full | Identification of key biomarkers for STAD using filter feature selection approaches |
title_fullStr | Identification of key biomarkers for STAD using filter feature selection approaches |
title_full_unstemmed | Identification of key biomarkers for STAD using filter feature selection approaches |
title_short | Identification of key biomarkers for STAD using filter feature selection approaches |
title_sort | identification of key biomarkers for stad using filter feature selection approaches |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9674689/ https://www.ncbi.nlm.nih.gov/pubmed/36400805 http://dx.doi.org/10.1038/s41598-022-21760-w |
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