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Automatically detecting Crohn’s disease and Ulcerative Colitis from endoscopic imaging

BACKGROUND: The SI-CURA project (Soluzioni Innovative per la gestione del paziente e il follow up terapeutico della Colite UlceRosA) is an Italian initiative aimed at the development of artificial intelligence solutions to discriminate pathologies of different nature, including inflammatory bowel di...

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Autores principales: Chierici, Marco, Puica, Nicolae, Pozzi, Matteo, Capistrano, Antonello, Donzella, Marcello Dorian, Colangelo, Antonio, Osmani, Venet, Jurman, Giuseppe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9675066/
https://www.ncbi.nlm.nih.gov/pubmed/36401328
http://dx.doi.org/10.1186/s12911-022-02043-w
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author Chierici, Marco
Puica, Nicolae
Pozzi, Matteo
Capistrano, Antonello
Donzella, Marcello Dorian
Colangelo, Antonio
Osmani, Venet
Jurman, Giuseppe
author_facet Chierici, Marco
Puica, Nicolae
Pozzi, Matteo
Capistrano, Antonello
Donzella, Marcello Dorian
Colangelo, Antonio
Osmani, Venet
Jurman, Giuseppe
author_sort Chierici, Marco
collection PubMed
description BACKGROUND: The SI-CURA project (Soluzioni Innovative per la gestione del paziente e il follow up terapeutico della Colite UlceRosA) is an Italian initiative aimed at the development of artificial intelligence solutions to discriminate pathologies of different nature, including inflammatory bowel disease (IBD), namely Ulcerative Colitis (UC) and Crohn’s disease (CD), based on endoscopic imaging of patients (P) and healthy controls (N). METHODS: In this study we develop a deep learning (DL) prototype to identify disease patterns through three binary classification tasks, namely (1) discriminating positive (pathological) samples from negative (healthy) samples (P vs N); (2) discrimination between Ulcerative Colitis and Crohn’s Disease samples (UC vs CD) and, (3) discrimination between Ulcerative Colitis and negative (healthy) samples (UC vs N). RESULTS: The model derived from our approach achieves a high performance of Matthews correlation coefficient (MCC) > 0.9 on the test set for P versus N and UC versus N, and MCC > 0.6 on the test set for UC versus CD. CONCLUSION: Our DL model effectively discriminates between pathological and negative samples, as well as between IBD subgroups, providing further evidence of its potential as a decision support tool for endoscopy-based diagnosis.
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spelling pubmed-96750662022-11-20 Automatically detecting Crohn’s disease and Ulcerative Colitis from endoscopic imaging Chierici, Marco Puica, Nicolae Pozzi, Matteo Capistrano, Antonello Donzella, Marcello Dorian Colangelo, Antonio Osmani, Venet Jurman, Giuseppe BMC Med Inform Decis Mak Research BACKGROUND: The SI-CURA project (Soluzioni Innovative per la gestione del paziente e il follow up terapeutico della Colite UlceRosA) is an Italian initiative aimed at the development of artificial intelligence solutions to discriminate pathologies of different nature, including inflammatory bowel disease (IBD), namely Ulcerative Colitis (UC) and Crohn’s disease (CD), based on endoscopic imaging of patients (P) and healthy controls (N). METHODS: In this study we develop a deep learning (DL) prototype to identify disease patterns through three binary classification tasks, namely (1) discriminating positive (pathological) samples from negative (healthy) samples (P vs N); (2) discrimination between Ulcerative Colitis and Crohn’s Disease samples (UC vs CD) and, (3) discrimination between Ulcerative Colitis and negative (healthy) samples (UC vs N). RESULTS: The model derived from our approach achieves a high performance of Matthews correlation coefficient (MCC) > 0.9 on the test set for P versus N and UC versus N, and MCC > 0.6 on the test set for UC versus CD. CONCLUSION: Our DL model effectively discriminates between pathological and negative samples, as well as between IBD subgroups, providing further evidence of its potential as a decision support tool for endoscopy-based diagnosis. BioMed Central 2022-11-18 /pmc/articles/PMC9675066/ /pubmed/36401328 http://dx.doi.org/10.1186/s12911-022-02043-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Chierici, Marco
Puica, Nicolae
Pozzi, Matteo
Capistrano, Antonello
Donzella, Marcello Dorian
Colangelo, Antonio
Osmani, Venet
Jurman, Giuseppe
Automatically detecting Crohn’s disease and Ulcerative Colitis from endoscopic imaging
title Automatically detecting Crohn’s disease and Ulcerative Colitis from endoscopic imaging
title_full Automatically detecting Crohn’s disease and Ulcerative Colitis from endoscopic imaging
title_fullStr Automatically detecting Crohn’s disease and Ulcerative Colitis from endoscopic imaging
title_full_unstemmed Automatically detecting Crohn’s disease and Ulcerative Colitis from endoscopic imaging
title_short Automatically detecting Crohn’s disease and Ulcerative Colitis from endoscopic imaging
title_sort automatically detecting crohn’s disease and ulcerative colitis from endoscopic imaging
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9675066/
https://www.ncbi.nlm.nih.gov/pubmed/36401328
http://dx.doi.org/10.1186/s12911-022-02043-w
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