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In Silico Evaluation of Nonsynonymous SNPs in Human ADAM33: The Most Common Form of Genetic Association to Asthma Susceptibility
ADAM33 is a zinc-dependent metalloprotease of the ADAM family, which plays a vital biological role as an activator of Th(2) cytokines and growth factors. Moreover, this protein is crucial for the normal development of the lung in the fetus two months after gestation leading to determining lung funct...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Hindawi
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9675607/ https://www.ncbi.nlm.nih.gov/pubmed/36411793 http://dx.doi.org/10.1155/2022/1089722 |
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author | Mohkam, Milad Golkar, Nasim Nabavizadeh, Seyed Hesamodin Esmaeilzadeh, Hossein Berenjian, Aydin Ghahramani, Zahra Gholami, Ahmad Alyasin, Soheila |
author_facet | Mohkam, Milad Golkar, Nasim Nabavizadeh, Seyed Hesamodin Esmaeilzadeh, Hossein Berenjian, Aydin Ghahramani, Zahra Gholami, Ahmad Alyasin, Soheila |
author_sort | Mohkam, Milad |
collection | PubMed |
description | ADAM33 is a zinc-dependent metalloprotease of the ADAM family, which plays a vital biological role as an activator of Th(2) cytokines and growth factors. Moreover, this protein is crucial for the normal development of the lung in the fetus two months after gestation leading to determining lung functions all over life. In this regard, mutations in ADAM33 have been linked with asthma risk factors. Consequently, identifying ADAM33 pathogenic nonsynonymous single-nucleotide polymorphisms (nsSNPs) can be very important in asthma treatment. In the present study, 1055 nsSNPs of human ADAM33 were analyzed using biocomputational software, 31 of which were found to be detrimental mutations. Precise structural and stability analysis revealed D219V, C669G, and C606S as the most destabilizing SNPs. Furthermore, MD simulations disclosed higher overall fluctuation and alteration in intramolecular interactions compared with the wild-type structure. Overall, the results suggest D219V, C669G, and C606S detrimental mutations as a starting point for further case-control studies on the ADAM33 protein as well as an essential source for future targeted mechanisms. |
format | Online Article Text |
id | pubmed-9675607 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-96756072022-11-20 In Silico Evaluation of Nonsynonymous SNPs in Human ADAM33: The Most Common Form of Genetic Association to Asthma Susceptibility Mohkam, Milad Golkar, Nasim Nabavizadeh, Seyed Hesamodin Esmaeilzadeh, Hossein Berenjian, Aydin Ghahramani, Zahra Gholami, Ahmad Alyasin, Soheila Comput Math Methods Med Research Article ADAM33 is a zinc-dependent metalloprotease of the ADAM family, which plays a vital biological role as an activator of Th(2) cytokines and growth factors. Moreover, this protein is crucial for the normal development of the lung in the fetus two months after gestation leading to determining lung functions all over life. In this regard, mutations in ADAM33 have been linked with asthma risk factors. Consequently, identifying ADAM33 pathogenic nonsynonymous single-nucleotide polymorphisms (nsSNPs) can be very important in asthma treatment. In the present study, 1055 nsSNPs of human ADAM33 were analyzed using biocomputational software, 31 of which were found to be detrimental mutations. Precise structural and stability analysis revealed D219V, C669G, and C606S as the most destabilizing SNPs. Furthermore, MD simulations disclosed higher overall fluctuation and alteration in intramolecular interactions compared with the wild-type structure. Overall, the results suggest D219V, C669G, and C606S detrimental mutations as a starting point for further case-control studies on the ADAM33 protein as well as an essential source for future targeted mechanisms. Hindawi 2022-11-12 /pmc/articles/PMC9675607/ /pubmed/36411793 http://dx.doi.org/10.1155/2022/1089722 Text en Copyright © 2022 Milad Mohkam et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Mohkam, Milad Golkar, Nasim Nabavizadeh, Seyed Hesamodin Esmaeilzadeh, Hossein Berenjian, Aydin Ghahramani, Zahra Gholami, Ahmad Alyasin, Soheila In Silico Evaluation of Nonsynonymous SNPs in Human ADAM33: The Most Common Form of Genetic Association to Asthma Susceptibility |
title | In Silico Evaluation of Nonsynonymous SNPs in Human ADAM33: The Most Common Form of Genetic Association to Asthma Susceptibility |
title_full | In Silico Evaluation of Nonsynonymous SNPs in Human ADAM33: The Most Common Form of Genetic Association to Asthma Susceptibility |
title_fullStr | In Silico Evaluation of Nonsynonymous SNPs in Human ADAM33: The Most Common Form of Genetic Association to Asthma Susceptibility |
title_full_unstemmed | In Silico Evaluation of Nonsynonymous SNPs in Human ADAM33: The Most Common Form of Genetic Association to Asthma Susceptibility |
title_short | In Silico Evaluation of Nonsynonymous SNPs in Human ADAM33: The Most Common Form of Genetic Association to Asthma Susceptibility |
title_sort | in silico evaluation of nonsynonymous snps in human adam33: the most common form of genetic association to asthma susceptibility |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9675607/ https://www.ncbi.nlm.nih.gov/pubmed/36411793 http://dx.doi.org/10.1155/2022/1089722 |
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