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The contributions of ammonia oxidizing bacteria and archaea to nitrification-dependent N(2)O emission in alkaline and neutral purple soils

Nitrification is believed to be one of the primary processes of N(2)O emission in the agroecological system, which is controlled by soil microbes and mainly regulated by soil pH, oxygen content and NH(4)(+) availability. Previous studies have proved that the relative contributions of ammonia oxidizi...

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Autores principales: Hu, Lei, Dong, Zhixin, Wang, Zheng, Xiao, Liwei, Zhu, Bo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9675842/
https://www.ncbi.nlm.nih.gov/pubmed/36402873
http://dx.doi.org/10.1038/s41598-022-23084-1
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author Hu, Lei
Dong, Zhixin
Wang, Zheng
Xiao, Liwei
Zhu, Bo
author_facet Hu, Lei
Dong, Zhixin
Wang, Zheng
Xiao, Liwei
Zhu, Bo
author_sort Hu, Lei
collection PubMed
description Nitrification is believed to be one of the primary processes of N(2)O emission in the agroecological system, which is controlled by soil microbes and mainly regulated by soil pH, oxygen content and NH(4)(+) availability. Previous studies have proved that the relative contributions of ammonia oxidizing bacteria (AOB) and archaea (AOA) to N(2)O production were varied with soil pH, however, there is still no consensus on the regulating mechanism of nitrification-derived N(2)O production by soil pH. In this study, 1-octyne (a selective inhibitor of AOB) and acetylene (an inhibitor of AOB and AOA) were used in a microcosm incubation experiment to differentiate the relative contribution of AOA and AOB to N(2)O emissions in a neutral (pH = 6.75) and an alkaline (pH = 8.35) soils. We found that the amendment of ammonium (NH(4)(+)) observably stimulated the production of both AOA and AOB-related N(2)O and increased the ammonia monooxygenase (AMO) gene abundances of AOA and AOB in the two test soils. Among which, AOB dominated the process of ammonia oxidation in the alkaline soil, contributing 70.8% of N(2)O production derived from nitrification. By contrast, the contribution of AOA and AOB accounted for about one-third of nitrification-related N(2)O in acidic soil, respectively. The results indicated that pH was a key factor to change abundance and activity of AOA and AOB, which led to the differentiation of derivation of N(2)O production in purple soils. We speculate that both NH(4)(+) content and soil pH mediated specialization of ammonia-oxidizing microorganisms together; and both specialization results and N(2)O yield led to the different N(2)O emission characteristics in purple soils. These results may help inform the development of N(2)O reduction strategies in the future.
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spelling pubmed-96758422022-11-21 The contributions of ammonia oxidizing bacteria and archaea to nitrification-dependent N(2)O emission in alkaline and neutral purple soils Hu, Lei Dong, Zhixin Wang, Zheng Xiao, Liwei Zhu, Bo Sci Rep Article Nitrification is believed to be one of the primary processes of N(2)O emission in the agroecological system, which is controlled by soil microbes and mainly regulated by soil pH, oxygen content and NH(4)(+) availability. Previous studies have proved that the relative contributions of ammonia oxidizing bacteria (AOB) and archaea (AOA) to N(2)O production were varied with soil pH, however, there is still no consensus on the regulating mechanism of nitrification-derived N(2)O production by soil pH. In this study, 1-octyne (a selective inhibitor of AOB) and acetylene (an inhibitor of AOB and AOA) were used in a microcosm incubation experiment to differentiate the relative contribution of AOA and AOB to N(2)O emissions in a neutral (pH = 6.75) and an alkaline (pH = 8.35) soils. We found that the amendment of ammonium (NH(4)(+)) observably stimulated the production of both AOA and AOB-related N(2)O and increased the ammonia monooxygenase (AMO) gene abundances of AOA and AOB in the two test soils. Among which, AOB dominated the process of ammonia oxidation in the alkaline soil, contributing 70.8% of N(2)O production derived from nitrification. By contrast, the contribution of AOA and AOB accounted for about one-third of nitrification-related N(2)O in acidic soil, respectively. The results indicated that pH was a key factor to change abundance and activity of AOA and AOB, which led to the differentiation of derivation of N(2)O production in purple soils. We speculate that both NH(4)(+) content and soil pH mediated specialization of ammonia-oxidizing microorganisms together; and both specialization results and N(2)O yield led to the different N(2)O emission characteristics in purple soils. These results may help inform the development of N(2)O reduction strategies in the future. Nature Publishing Group UK 2022-11-19 /pmc/articles/PMC9675842/ /pubmed/36402873 http://dx.doi.org/10.1038/s41598-022-23084-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Hu, Lei
Dong, Zhixin
Wang, Zheng
Xiao, Liwei
Zhu, Bo
The contributions of ammonia oxidizing bacteria and archaea to nitrification-dependent N(2)O emission in alkaline and neutral purple soils
title The contributions of ammonia oxidizing bacteria and archaea to nitrification-dependent N(2)O emission in alkaline and neutral purple soils
title_full The contributions of ammonia oxidizing bacteria and archaea to nitrification-dependent N(2)O emission in alkaline and neutral purple soils
title_fullStr The contributions of ammonia oxidizing bacteria and archaea to nitrification-dependent N(2)O emission in alkaline and neutral purple soils
title_full_unstemmed The contributions of ammonia oxidizing bacteria and archaea to nitrification-dependent N(2)O emission in alkaline and neutral purple soils
title_short The contributions of ammonia oxidizing bacteria and archaea to nitrification-dependent N(2)O emission in alkaline and neutral purple soils
title_sort contributions of ammonia oxidizing bacteria and archaea to nitrification-dependent n(2)o emission in alkaline and neutral purple soils
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9675842/
https://www.ncbi.nlm.nih.gov/pubmed/36402873
http://dx.doi.org/10.1038/s41598-022-23084-1
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