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Data-driven learning of Boolean networks and functions by optimal causation entropy principle

Boolean functions, and networks thereof, are useful for analysis of complex data systems, including from biological systems, bioinformatics, decision making, medical fields, and finance. However, automated learning of a Boolean networked function, from data, is a challenging task due in part to the...

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Detalles Bibliográficos
Autores principales: Sun, Jie, AlMomani, Abd AlRahman R., Bollt, Erik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9676542/
https://www.ncbi.nlm.nih.gov/pubmed/36419440
http://dx.doi.org/10.1016/j.patter.2022.100631
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author Sun, Jie
AlMomani, Abd AlRahman R.
Bollt, Erik
author_facet Sun, Jie
AlMomani, Abd AlRahman R.
Bollt, Erik
author_sort Sun, Jie
collection PubMed
description Boolean functions, and networks thereof, are useful for analysis of complex data systems, including from biological systems, bioinformatics, decision making, medical fields, and finance. However, automated learning of a Boolean networked function, from data, is a challenging task due in part to the large number of unknown structures of the network and the underlying functions. In this paper, we develop a new information theoretic methodology, called Boolean optimal causation entropy, that we show is significantly more efficient than previous approaches. Our method is computationally efficient and also resilient to noise. Furthermore, it allows for selection of features that best explains the process, described as a networked Boolean function reduced-order model. We highlight our method to the feature selection in several real-world examples: (1) diagnosis of urinary diseases, (2) cardiac single proton emission computed tomography diagnosis, (3) informative positions in the game Tic-Tac-Toe, and (4) risk causality analysis of loans in default status.
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spelling pubmed-96765422022-11-22 Data-driven learning of Boolean networks and functions by optimal causation entropy principle Sun, Jie AlMomani, Abd AlRahman R. Bollt, Erik Patterns (N Y) Article Boolean functions, and networks thereof, are useful for analysis of complex data systems, including from biological systems, bioinformatics, decision making, medical fields, and finance. However, automated learning of a Boolean networked function, from data, is a challenging task due in part to the large number of unknown structures of the network and the underlying functions. In this paper, we develop a new information theoretic methodology, called Boolean optimal causation entropy, that we show is significantly more efficient than previous approaches. Our method is computationally efficient and also resilient to noise. Furthermore, it allows for selection of features that best explains the process, described as a networked Boolean function reduced-order model. We highlight our method to the feature selection in several real-world examples: (1) diagnosis of urinary diseases, (2) cardiac single proton emission computed tomography diagnosis, (3) informative positions in the game Tic-Tac-Toe, and (4) risk causality analysis of loans in default status. Elsevier 2022-11-11 /pmc/articles/PMC9676542/ /pubmed/36419440 http://dx.doi.org/10.1016/j.patter.2022.100631 Text en © 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Sun, Jie
AlMomani, Abd AlRahman R.
Bollt, Erik
Data-driven learning of Boolean networks and functions by optimal causation entropy principle
title Data-driven learning of Boolean networks and functions by optimal causation entropy principle
title_full Data-driven learning of Boolean networks and functions by optimal causation entropy principle
title_fullStr Data-driven learning of Boolean networks and functions by optimal causation entropy principle
title_full_unstemmed Data-driven learning of Boolean networks and functions by optimal causation entropy principle
title_short Data-driven learning of Boolean networks and functions by optimal causation entropy principle
title_sort data-driven learning of boolean networks and functions by optimal causation entropy principle
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9676542/
https://www.ncbi.nlm.nih.gov/pubmed/36419440
http://dx.doi.org/10.1016/j.patter.2022.100631
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