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Variational Autoencoder Based Imbalanced COVID-19 Detection Using Chest X-Ray Images

Early and fast detection of disease is essential for the fight against COVID-19 pandemic. Researchers have focused on developing robust and cost-effective detection methods using Deep learning based chest X-Ray image processing. However, such prediction models are often not well suited to address th...

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Autores principales: Chatterjee, Sankhadeep, Maity, Soumyajit, Bhattacharjee, Mayukh, Banerjee, Soumen, Das, Asit Kumar, Ding, Weiping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Japan 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9676807/
https://www.ncbi.nlm.nih.gov/pubmed/36439303
http://dx.doi.org/10.1007/s00354-022-00194-y
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author Chatterjee, Sankhadeep
Maity, Soumyajit
Bhattacharjee, Mayukh
Banerjee, Soumen
Das, Asit Kumar
Ding, Weiping
author_facet Chatterjee, Sankhadeep
Maity, Soumyajit
Bhattacharjee, Mayukh
Banerjee, Soumen
Das, Asit Kumar
Ding, Weiping
author_sort Chatterjee, Sankhadeep
collection PubMed
description Early and fast detection of disease is essential for the fight against COVID-19 pandemic. Researchers have focused on developing robust and cost-effective detection methods using Deep learning based chest X-Ray image processing. However, such prediction models are often not well suited to address the challenge of highly imabalanced datasets. The current work is an attempt to address the issue by utilizing unsupervised Variational Auto Encoders (VAEs). Firstly, chest X-Ray images are converted to a latent space by learning the most important features using VAEs. Secondly, a wide range of well established data resampling techniques are used to balance the preexisting imbalanced classes in the latent vector form of the dataset. Finally, the modified dataset in the new feature space is used to train well known classification models to classify chest X-Ray images into three different classes viz., ”COVID-19”, ”Pneumonia”, and ”Normal”. In order to capture the quality of resampling methods, 10-folds cross validation technique is applied on the dataset. Extensive experimental analysis have been carried out and results so obtained indicate significant improvement in COVID-19 detection using the proposed VAE based method. Furthermore, the ingenuity of the results have been established by performing Wilcoxon rank test with 95% level of significance.
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spelling pubmed-96768072022-11-21 Variational Autoencoder Based Imbalanced COVID-19 Detection Using Chest X-Ray Images Chatterjee, Sankhadeep Maity, Soumyajit Bhattacharjee, Mayukh Banerjee, Soumen Das, Asit Kumar Ding, Weiping New Gener Comput Article Early and fast detection of disease is essential for the fight against COVID-19 pandemic. Researchers have focused on developing robust and cost-effective detection methods using Deep learning based chest X-Ray image processing. However, such prediction models are often not well suited to address the challenge of highly imabalanced datasets. The current work is an attempt to address the issue by utilizing unsupervised Variational Auto Encoders (VAEs). Firstly, chest X-Ray images are converted to a latent space by learning the most important features using VAEs. Secondly, a wide range of well established data resampling techniques are used to balance the preexisting imbalanced classes in the latent vector form of the dataset. Finally, the modified dataset in the new feature space is used to train well known classification models to classify chest X-Ray images into three different classes viz., ”COVID-19”, ”Pneumonia”, and ”Normal”. In order to capture the quality of resampling methods, 10-folds cross validation technique is applied on the dataset. Extensive experimental analysis have been carried out and results so obtained indicate significant improvement in COVID-19 detection using the proposed VAE based method. Furthermore, the ingenuity of the results have been established by performing Wilcoxon rank test with 95% level of significance. Springer Japan 2022-11-19 2023 /pmc/articles/PMC9676807/ /pubmed/36439303 http://dx.doi.org/10.1007/s00354-022-00194-y Text en © Ohmsha, Ltd. and Springer Japan KK, part of Springer Nature 2022, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Chatterjee, Sankhadeep
Maity, Soumyajit
Bhattacharjee, Mayukh
Banerjee, Soumen
Das, Asit Kumar
Ding, Weiping
Variational Autoencoder Based Imbalanced COVID-19 Detection Using Chest X-Ray Images
title Variational Autoencoder Based Imbalanced COVID-19 Detection Using Chest X-Ray Images
title_full Variational Autoencoder Based Imbalanced COVID-19 Detection Using Chest X-Ray Images
title_fullStr Variational Autoencoder Based Imbalanced COVID-19 Detection Using Chest X-Ray Images
title_full_unstemmed Variational Autoencoder Based Imbalanced COVID-19 Detection Using Chest X-Ray Images
title_short Variational Autoencoder Based Imbalanced COVID-19 Detection Using Chest X-Ray Images
title_sort variational autoencoder based imbalanced covid-19 detection using chest x-ray images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9676807/
https://www.ncbi.nlm.nih.gov/pubmed/36439303
http://dx.doi.org/10.1007/s00354-022-00194-y
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