Cargando…

CysModDB: a comprehensive platform with the integration of manually curated resources and analysis tools for cysteine posttranslational modifications

The unique chemical reactivity of cysteine residues results in various posttranslational modifications (PTMs), which are implicated in regulating a range of fundamental biological processes. With the advent of chemical proteomics technology, thousands of cysteine PTM (CysPTM) sites have been identif...

Descripción completa

Detalles Bibliográficos
Autores principales:	Meng, Yanzheng, Zhang, Lin, Zhang, Laizhi, Wang, Ziyu, Wang, Xuanwen, Li, Chan, Chen, Yu, Shang, Shipeng, Li, Lei
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2022
Materias:	Problem Solving Protocol
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9677505/ https://www.ncbi.nlm.nih.gov/pubmed/36305460 http://dx.doi.org/10.1093/bib/bbac460

Ejemplares similares

Community curation of bioinformatics software and data resources
por: Ison, Jon, et al.
Publicado: (2019)

The repertoire of copy number alteration signatures in human cancer
por: Tao, Ziyu, et al.
Publicado: (2023)

SMG: self-supervised masked graph learning for cancer gene identification
por: Cui, Yan, et al.
Publicado: (2023)

DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads
por: Li, Jiaqi, et al.
Publicado: (2021)

HNetGO: protein function prediction via heterogeneous network transformer
por: Zhang, Xiaoshuai, et al.
Publicado: (2023)

PEcnv: accurate and efficient detection of copy number variations of various lengths
por: Wang, Xuwen, et al.
Publicado: (2022)

FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight
por: Zhang, Feng, et al.
Publicado: (2022)

Tools for fundamental analysis functions of TCR repertoires: a systematic comparison
por: Zhang, Yanfang, et al.
Publicado: (2019)

InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop
por: Zhang, Feng, et al.
Publicado: (2023)

Consensus clustering of single-cell RNA-seq data by enhancing network affinity
por: Cui, Yaxuan, et al.
Publicado: (2021)

Locating transcription factor binding sites by fully convolutional neural network
por: Zhang, Qinhu, et al.
Publicado: (2021)

DCiPatho: deep cross-fusion networks for genome scale identification of pathogens
por: Jiang, Gaofei, et al.
Publicado: (2023)

SPCS: a spatial and pattern combined smoothing method for spatial transcriptomic expression
por: Liu, Yusong, et al.
Publicado: (2022)

Evaluation of phenotype-driven gene prioritization methods for Mendelian diseases
por: Yuan, Xiao, et al.
Publicado: (2022)

McAN: a novel computational algorithm and platform for constructing and visualizing haplotype networks
por: Li, Lun, et al.
Publicado: (2023)

A new approach to decode DNA methylome and genomic variants simultaneously from double strand bisulfite sequencing
por: Liang, Jialong, et al.
Publicado: (2021)

ExosomePurity: tumour purity deconvolution in serum exosomes based on miRNA signatures
por: Wu, Tao, et al.
Publicado: (2023)

Drug repositioning based on weighted local information augmented graph neural network
por: Meng, Yajie, et al.
Publicado: (2023)

Improving artificial intelligence pipeline for liver malignancy diagnosis using ultrasound images and video frames
por: Xu, Yiming, et al.
Publicado: (2022)

cSurvival: a web resource for biomarker interactions in cancer outcomes and in cell lines
por: Cheng, Xuanjin, et al.
Publicado: (2022)

DLRAPom: a hybrid pipeline of Optimized XGBoost-guided integrative multiomics analysis for identifying targetable disease-related lncRNA–miRNA–mRNA regulatory axes
por: Shen, Chen, et al.
Publicado: (2022)

Multi-modal chemical information reconstruction from images and texts for exploring the near-drug space
por: Wang, Jie, et al.
Publicado: (2022)

Fusing 2D and 3D molecular graphs as unambiguous molecular descriptors for conformational and chiral stereoisomers
por: Du, Wenjie, et al.
Publicado: (2022)

Identifying and characterizing drug sensitivity-related lncRNA-TF-gene regulatory triplets
por: Hu, Congxue, et al.
Publicado: (2022)

EVlncRNA-Dpred: improved prediction of experimentally validated lncRNAs by deep learning
por: Zhou, Bailing, et al.
Publicado: (2022)

MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data
por: Han, Xinyin, et al.
Publicado: (2021)

An efficient multi-locus mixed model framework for the detection of small and linked QTLs in F(2)
por: Wen, Yang-Jun, et al.
Publicado: (2018)

pCysMod: Prediction of Multiple Cysteine Modifications Based on Deep Learning Framework
por: Li, Shihua, et al.
Publicado: (2021)

COIMMR: a computational framework to reveal the contribution of herbal ingredients against human cancer via immune microenvironment and metabolic reprogramming
por: Tian, Saisai, et al.
Publicado: (2023)

Assessing protein model quality based on deep graph coupled networks using protein language model
por: Liu, Dong, et al.
Publicado: (2023)

Machine learning revealed stemness features and a novel stemness-based classification with appealing implications in discriminating the prognosis, immunotherapy and temozolomide responses of 906 glioblastoma patients
por: Wang, Zihao, et al.
Publicado: (2021)

Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data
por: Dong, Kangning, et al.
Publicado: (2020)

RNAlight: a machine learning model to identify nucleotide features determining RNA subcellular localization
por: Yuan, Guo-Hua, et al.
Publicado: (2022)

PedMiner: a tool for linkage analysis-based identification of disease-associated variants using family based whole-exome sequencing data
por: Zhou, Jianteng, et al.
Publicado: (2020)

Improving the performance of single-cell RNA-seq data mining based on relative expression orderings
por: Chen, Yuanyuan, et al.
Publicado: (2022)

Benchmarking network-based gene prioritization methods for cerebral small vessel disease
por: Zhang, Huayu, et al.
Publicado: (2021)

HiC1Dmetrics: framework to extract various one-dimensional features from chromosome structure data
por: Wang, Jiankang, et al.
Publicado: (2021)

A penalized linear mixed model with generalized method of moments for prediction analysis on high-dimensional multi-omics data
por: Wang, Xiaqiong, et al.
Publicado: (2022)

HiC4D: forecasting spatiotemporal Hi-C data with residual ConvLSTM
por: Liu, Tong, et al.
Publicado: (2023)

Transfer learning for clustering single-cell RNA-seq data crossing-species and batch, case on uterine fibroids
por: Wang, Yu Mei, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_6373c39ndok7el6klopss5g5be