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Establishment of an age‐ and tumor microenvironment‐related gene signature for survival prediction in prostate cancer

BACKGROUND: The incidence of prostate cancer (PCa) increases with age, and age and tumor microenvironment (TME) have important roles in the development of PCa, while the underlying mechanisms have not been fully elucidated. MATERIALS AND METHOD: The Cancer Genome Atlas‐Prostate Adenocarcinoma (TCGA‐...

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Autores principales: Chen, Lei, Zhang, Meng, Zhou, Jun, Zhang, Li, Liang, Chaozhao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678094/
https://www.ncbi.nlm.nih.gov/pubmed/35535438
http://dx.doi.org/10.1002/cam4.4776
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author Chen, Lei
Zhang, Meng
Zhou, Jun
Zhang, Li
Liang, Chaozhao
author_facet Chen, Lei
Zhang, Meng
Zhou, Jun
Zhang, Li
Liang, Chaozhao
author_sort Chen, Lei
collection PubMed
description BACKGROUND: The incidence of prostate cancer (PCa) increases with age, and age and tumor microenvironment (TME) have important roles in the development of PCa, while the underlying mechanisms have not been fully elucidated. MATERIALS AND METHOD: The Cancer Genome Atlas‐Prostate Adenocarcinoma (TCGA‐PRAD) RNA‐Seq, the Surveillance, Epidemiology, and End Results (SEER‐PRAD), and ESTIMATE data were downloaded, and the clinical information of PRAD patients in our cohort was collected. The associations among age, TME, and PCa were analyzed. The age‐ and TME‐related risk score (ATRS) of each TCGA‐PRAD sample was calculated based on the identified age‐ and TME‐related differentially expressed genes (DEGs), and the correlation of ATRS with immune‐related characteristics of PCa patients was analyzed, and the ATRS‐based overall survival (OS)‐predicting nomogram was also established. RESULTS: Age was correlated with OS, PSA level, tumor stage, T stage, N stage, Gleason score, nerve invasion of PCa, and age was positively correlated with stromal, immune, and ESTIMATE scores. The compositions of immune cells of TCGA‐PRAD patients altered with age. Nine age‐ and TME‐related prognostic DEGs were identified, and the ATRS of each TCGA‐PRAD patient was calculated based on the identified nine DEGs. The ATRS was associated with the expression of immune checkpoints and intratumoral cytolytic activity, and the ATRS‐based nomogram performed well in predicting the outcomes of PCa patients. CONCLUSIONS: Age and TME had crucial roles in PCa, and the ATRS gene signature was associated with the immune‐related characteristics of PCa patients, which showed good performance in predicting OS of PCa patients.
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spelling pubmed-96780942022-11-22 Establishment of an age‐ and tumor microenvironment‐related gene signature for survival prediction in prostate cancer Chen, Lei Zhang, Meng Zhou, Jun Zhang, Li Liang, Chaozhao Cancer Med Research Articles BACKGROUND: The incidence of prostate cancer (PCa) increases with age, and age and tumor microenvironment (TME) have important roles in the development of PCa, while the underlying mechanisms have not been fully elucidated. MATERIALS AND METHOD: The Cancer Genome Atlas‐Prostate Adenocarcinoma (TCGA‐PRAD) RNA‐Seq, the Surveillance, Epidemiology, and End Results (SEER‐PRAD), and ESTIMATE data were downloaded, and the clinical information of PRAD patients in our cohort was collected. The associations among age, TME, and PCa were analyzed. The age‐ and TME‐related risk score (ATRS) of each TCGA‐PRAD sample was calculated based on the identified age‐ and TME‐related differentially expressed genes (DEGs), and the correlation of ATRS with immune‐related characteristics of PCa patients was analyzed, and the ATRS‐based overall survival (OS)‐predicting nomogram was also established. RESULTS: Age was correlated with OS, PSA level, tumor stage, T stage, N stage, Gleason score, nerve invasion of PCa, and age was positively correlated with stromal, immune, and ESTIMATE scores. The compositions of immune cells of TCGA‐PRAD patients altered with age. Nine age‐ and TME‐related prognostic DEGs were identified, and the ATRS of each TCGA‐PRAD patient was calculated based on the identified nine DEGs. The ATRS was associated with the expression of immune checkpoints and intratumoral cytolytic activity, and the ATRS‐based nomogram performed well in predicting the outcomes of PCa patients. CONCLUSIONS: Age and TME had crucial roles in PCa, and the ATRS gene signature was associated with the immune‐related characteristics of PCa patients, which showed good performance in predicting OS of PCa patients. John Wiley and Sons Inc. 2022-05-09 /pmc/articles/PMC9678094/ /pubmed/35535438 http://dx.doi.org/10.1002/cam4.4776 Text en © 2022 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Chen, Lei
Zhang, Meng
Zhou, Jun
Zhang, Li
Liang, Chaozhao
Establishment of an age‐ and tumor microenvironment‐related gene signature for survival prediction in prostate cancer
title Establishment of an age‐ and tumor microenvironment‐related gene signature for survival prediction in prostate cancer
title_full Establishment of an age‐ and tumor microenvironment‐related gene signature for survival prediction in prostate cancer
title_fullStr Establishment of an age‐ and tumor microenvironment‐related gene signature for survival prediction in prostate cancer
title_full_unstemmed Establishment of an age‐ and tumor microenvironment‐related gene signature for survival prediction in prostate cancer
title_short Establishment of an age‐ and tumor microenvironment‐related gene signature for survival prediction in prostate cancer
title_sort establishment of an age‐ and tumor microenvironment‐related gene signature for survival prediction in prostate cancer
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678094/
https://www.ncbi.nlm.nih.gov/pubmed/35535438
http://dx.doi.org/10.1002/cam4.4776
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