Cargando…

A Novel Insight into Paraptosis-Related Classification and Signature in Lower-Grade Gliomas

Lower-grade gliomas (LGG) are the most common intracranial malignancies that readily evolve to high-grade gliomas and increase drug resistance. Paraptosis is defined as a nonapoptotic form of programmed cell death, which is gradually focused on patients with gliomas to develop treatment options. How...

Descripción completa

Detalles Bibliográficos
Autores principales: Qian, Xi-Feng, Zhang, Jia-Hao, Mai, Yue-Xue, Yin, Xin, Zheng, Yu-Bin, Yu, Zi-Yuan, Zhu, Guo-Dong, Guo, Xu-Guang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678488/
https://www.ncbi.nlm.nih.gov/pubmed/36419652
http://dx.doi.org/10.1155/2022/6465760
_version_ 1784833996769722368
author Qian, Xi-Feng
Zhang, Jia-Hao
Mai, Yue-Xue
Yin, Xin
Zheng, Yu-Bin
Yu, Zi-Yuan
Zhu, Guo-Dong
Guo, Xu-Guang
author_facet Qian, Xi-Feng
Zhang, Jia-Hao
Mai, Yue-Xue
Yin, Xin
Zheng, Yu-Bin
Yu, Zi-Yuan
Zhu, Guo-Dong
Guo, Xu-Guang
author_sort Qian, Xi-Feng
collection PubMed
description Lower-grade gliomas (LGG) are the most common intracranial malignancies that readily evolve to high-grade gliomas and increase drug resistance. Paraptosis is defined as a nonapoptotic form of programmed cell death, which is gradually focused on patients with gliomas to develop treatment options. However, the specific role of paraptosis in LGG and its correlation is still vague. In this study, we first establish the novel paraptosis-based prognostic model for LGG patients. The relevant data of LGG patients were acquired from The Cancer Genome Atlas database, and we found that LGG patients could be divided into three different clusters based on paraptosis via consensus cluster analysis. Through least absolute shrinkage and selection operator regression analysis and multivariate Cox regression analysis, 10-paraptosis-related gene (PRG) signatures (CDK4, TNK2, DSTYK, CDKN3, CCR4, CASP9, HSPA5, RGR, LPAR1, and PDCD6IP) were identified to separate LGG patients into high- and low-risk subgroups successfully. The Kaplan–Meier analysis and time-dependent receiver-operating characteristic showed that the performances of predicting overall survival (OS) were dramatically high. The parallel results were reappeared and verified by using the Chinese Glioma Genome Atlas and Gene Expression Omnibus databases. Independent prognostic analysis and nomogram construction implied that risk scores could be considered the independent factor to predict OS. Enrichment analysis indicated that immune-related biological processes were generally enriched, and different immune statuses were highly infiltrated in high-risk group. We also confirmed the potential relationship of 10-PRG signatures and drug sensitivity of Food and Drug Administration–approved drugs. In summary, our findings provide a novel knowledge of paraptosis status and crucial direction to further explore the role of PRG signatures in LGG.
format Online
Article
Text
id pubmed-9678488
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-96784882022-11-22 A Novel Insight into Paraptosis-Related Classification and Signature in Lower-Grade Gliomas Qian, Xi-Feng Zhang, Jia-Hao Mai, Yue-Xue Yin, Xin Zheng, Yu-Bin Yu, Zi-Yuan Zhu, Guo-Dong Guo, Xu-Guang Int J Genomics Research Article Lower-grade gliomas (LGG) are the most common intracranial malignancies that readily evolve to high-grade gliomas and increase drug resistance. Paraptosis is defined as a nonapoptotic form of programmed cell death, which is gradually focused on patients with gliomas to develop treatment options. However, the specific role of paraptosis in LGG and its correlation is still vague. In this study, we first establish the novel paraptosis-based prognostic model for LGG patients. The relevant data of LGG patients were acquired from The Cancer Genome Atlas database, and we found that LGG patients could be divided into three different clusters based on paraptosis via consensus cluster analysis. Through least absolute shrinkage and selection operator regression analysis and multivariate Cox regression analysis, 10-paraptosis-related gene (PRG) signatures (CDK4, TNK2, DSTYK, CDKN3, CCR4, CASP9, HSPA5, RGR, LPAR1, and PDCD6IP) were identified to separate LGG patients into high- and low-risk subgroups successfully. The Kaplan–Meier analysis and time-dependent receiver-operating characteristic showed that the performances of predicting overall survival (OS) were dramatically high. The parallel results were reappeared and verified by using the Chinese Glioma Genome Atlas and Gene Expression Omnibus databases. Independent prognostic analysis and nomogram construction implied that risk scores could be considered the independent factor to predict OS. Enrichment analysis indicated that immune-related biological processes were generally enriched, and different immune statuses were highly infiltrated in high-risk group. We also confirmed the potential relationship of 10-PRG signatures and drug sensitivity of Food and Drug Administration–approved drugs. In summary, our findings provide a novel knowledge of paraptosis status and crucial direction to further explore the role of PRG signatures in LGG. Hindawi 2022-11-14 /pmc/articles/PMC9678488/ /pubmed/36419652 http://dx.doi.org/10.1155/2022/6465760 Text en Copyright © 2022 Xi-Feng Qian et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Qian, Xi-Feng
Zhang, Jia-Hao
Mai, Yue-Xue
Yin, Xin
Zheng, Yu-Bin
Yu, Zi-Yuan
Zhu, Guo-Dong
Guo, Xu-Guang
A Novel Insight into Paraptosis-Related Classification and Signature in Lower-Grade Gliomas
title A Novel Insight into Paraptosis-Related Classification and Signature in Lower-Grade Gliomas
title_full A Novel Insight into Paraptosis-Related Classification and Signature in Lower-Grade Gliomas
title_fullStr A Novel Insight into Paraptosis-Related Classification and Signature in Lower-Grade Gliomas
title_full_unstemmed A Novel Insight into Paraptosis-Related Classification and Signature in Lower-Grade Gliomas
title_short A Novel Insight into Paraptosis-Related Classification and Signature in Lower-Grade Gliomas
title_sort novel insight into paraptosis-related classification and signature in lower-grade gliomas
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678488/
https://www.ncbi.nlm.nih.gov/pubmed/36419652
http://dx.doi.org/10.1155/2022/6465760
work_keys_str_mv AT qianxifeng anovelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT zhangjiahao anovelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT maiyuexue anovelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT yinxin anovelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT zhengyubin anovelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT yuziyuan anovelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT zhuguodong anovelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT guoxuguang anovelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT qianxifeng novelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT zhangjiahao novelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT maiyuexue novelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT yinxin novelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT zhengyubin novelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT yuziyuan novelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT zhuguodong novelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas
AT guoxuguang novelinsightintoparaptosisrelatedclassificationandsignatureinlowergradegliomas