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Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review

Bioinformatics methods were used to identify the key genes associated with the immune microenvironment of hepatocellular carcinoma (HCC) to construct an immune risk prognostic model (IRPM) and to study the correlation between IRPM’s risk groups and immune characteristics of patients with HCC. METHOD...

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Autores principales: Chen, Yu-Yang, Zhang, Shi-Mao, Zhao, Heng-Xia, Zhang, Jing-Yue, Lian, Li-Rong, Liu, De-Liang, Chu, Shu-Fang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678506/
https://www.ncbi.nlm.nih.gov/pubmed/36401409
http://dx.doi.org/10.1097/MD.0000000000031814
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author Chen, Yu-Yang
Zhang, Shi-Mao
Zhao, Heng-Xia
Zhang, Jing-Yue
Lian, Li-Rong
Liu, De-Liang
Chu, Shu-Fang
author_facet Chen, Yu-Yang
Zhang, Shi-Mao
Zhao, Heng-Xia
Zhang, Jing-Yue
Lian, Li-Rong
Liu, De-Liang
Chu, Shu-Fang
author_sort Chen, Yu-Yang
collection PubMed
description Bioinformatics methods were used to identify the key genes associated with the immune microenvironment of hepatocellular carcinoma (HCC) to construct an immune risk prognostic model (IRPM) and to study the correlation between IRPM’s risk groups and immune characteristics of patients with HCC. METHODS: HCC transcriptome sequencing information was searched for immune-related genes (IRGs) that were regularly expressed in cancer tissues. The IRGs, which were strongly linked to overall survival were screened; the prognostic characteristics model was constructed using Cox regression analysis. IRPM’s independent prognostic value was explored; Kaplan–Meier survival and receiver-operating characteristic curves were used to determine the model prediction ability in the led-to queue. RESULTS: Patients in the high-risk group (HRG) showed significantly poor outcomes. Gene Set Enrichment Analysis revealed factors involved in both the HRG and low risk group. Immune-related hub genes (IRHGs) and drug sensitivity expression levels revealed that all IRHGs were correlated with drug sensitivity for certain chemotherapy drugs. CONCLUSION: The study results may serve as a reference for improving prognosis, early screening, and immunotherapy in patients with HCC.
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spelling pubmed-96785062022-11-22 Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review Chen, Yu-Yang Zhang, Shi-Mao Zhao, Heng-Xia Zhang, Jing-Yue Lian, Li-Rong Liu, De-Liang Chu, Shu-Fang Medicine (Baltimore) 5400 Bioinformatics methods were used to identify the key genes associated with the immune microenvironment of hepatocellular carcinoma (HCC) to construct an immune risk prognostic model (IRPM) and to study the correlation between IRPM’s risk groups and immune characteristics of patients with HCC. METHODS: HCC transcriptome sequencing information was searched for immune-related genes (IRGs) that were regularly expressed in cancer tissues. The IRGs, which were strongly linked to overall survival were screened; the prognostic characteristics model was constructed using Cox regression analysis. IRPM’s independent prognostic value was explored; Kaplan–Meier survival and receiver-operating characteristic curves were used to determine the model prediction ability in the led-to queue. RESULTS: Patients in the high-risk group (HRG) showed significantly poor outcomes. Gene Set Enrichment Analysis revealed factors involved in both the HRG and low risk group. Immune-related hub genes (IRHGs) and drug sensitivity expression levels revealed that all IRHGs were correlated with drug sensitivity for certain chemotherapy drugs. CONCLUSION: The study results may serve as a reference for improving prognosis, early screening, and immunotherapy in patients with HCC. Lippincott Williams & Wilkins 2022-11-18 /pmc/articles/PMC9678506/ /pubmed/36401409 http://dx.doi.org/10.1097/MD.0000000000031814 Text en Copyright © 2022 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle 5400
Chen, Yu-Yang
Zhang, Shi-Mao
Zhao, Heng-Xia
Zhang, Jing-Yue
Lian, Li-Rong
Liu, De-Liang
Chu, Shu-Fang
Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review
title Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review
title_full Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review
title_fullStr Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review
title_full_unstemmed Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review
title_short Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review
title_sort identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: a review
topic 5400
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678506/
https://www.ncbi.nlm.nih.gov/pubmed/36401409
http://dx.doi.org/10.1097/MD.0000000000031814
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