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Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review
Bioinformatics methods were used to identify the key genes associated with the immune microenvironment of hepatocellular carcinoma (HCC) to construct an immune risk prognostic model (IRPM) and to study the correlation between IRPM’s risk groups and immune characteristics of patients with HCC. METHOD...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678506/ https://www.ncbi.nlm.nih.gov/pubmed/36401409 http://dx.doi.org/10.1097/MD.0000000000031814 |
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author | Chen, Yu-Yang Zhang, Shi-Mao Zhao, Heng-Xia Zhang, Jing-Yue Lian, Li-Rong Liu, De-Liang Chu, Shu-Fang |
author_facet | Chen, Yu-Yang Zhang, Shi-Mao Zhao, Heng-Xia Zhang, Jing-Yue Lian, Li-Rong Liu, De-Liang Chu, Shu-Fang |
author_sort | Chen, Yu-Yang |
collection | PubMed |
description | Bioinformatics methods were used to identify the key genes associated with the immune microenvironment of hepatocellular carcinoma (HCC) to construct an immune risk prognostic model (IRPM) and to study the correlation between IRPM’s risk groups and immune characteristics of patients with HCC. METHODS: HCC transcriptome sequencing information was searched for immune-related genes (IRGs) that were regularly expressed in cancer tissues. The IRGs, which were strongly linked to overall survival were screened; the prognostic characteristics model was constructed using Cox regression analysis. IRPM’s independent prognostic value was explored; Kaplan–Meier survival and receiver-operating characteristic curves were used to determine the model prediction ability in the led-to queue. RESULTS: Patients in the high-risk group (HRG) showed significantly poor outcomes. Gene Set Enrichment Analysis revealed factors involved in both the HRG and low risk group. Immune-related hub genes (IRHGs) and drug sensitivity expression levels revealed that all IRHGs were correlated with drug sensitivity for certain chemotherapy drugs. CONCLUSION: The study results may serve as a reference for improving prognosis, early screening, and immunotherapy in patients with HCC. |
format | Online Article Text |
id | pubmed-9678506 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-96785062022-11-22 Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review Chen, Yu-Yang Zhang, Shi-Mao Zhao, Heng-Xia Zhang, Jing-Yue Lian, Li-Rong Liu, De-Liang Chu, Shu-Fang Medicine (Baltimore) 5400 Bioinformatics methods were used to identify the key genes associated with the immune microenvironment of hepatocellular carcinoma (HCC) to construct an immune risk prognostic model (IRPM) and to study the correlation between IRPM’s risk groups and immune characteristics of patients with HCC. METHODS: HCC transcriptome sequencing information was searched for immune-related genes (IRGs) that were regularly expressed in cancer tissues. The IRGs, which were strongly linked to overall survival were screened; the prognostic characteristics model was constructed using Cox regression analysis. IRPM’s independent prognostic value was explored; Kaplan–Meier survival and receiver-operating characteristic curves were used to determine the model prediction ability in the led-to queue. RESULTS: Patients in the high-risk group (HRG) showed significantly poor outcomes. Gene Set Enrichment Analysis revealed factors involved in both the HRG and low risk group. Immune-related hub genes (IRHGs) and drug sensitivity expression levels revealed that all IRHGs were correlated with drug sensitivity for certain chemotherapy drugs. CONCLUSION: The study results may serve as a reference for improving prognosis, early screening, and immunotherapy in patients with HCC. Lippincott Williams & Wilkins 2022-11-18 /pmc/articles/PMC9678506/ /pubmed/36401409 http://dx.doi.org/10.1097/MD.0000000000031814 Text en Copyright © 2022 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | 5400 Chen, Yu-Yang Zhang, Shi-Mao Zhao, Heng-Xia Zhang, Jing-Yue Lian, Li-Rong Liu, De-Liang Chu, Shu-Fang Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review |
title | Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review |
title_full | Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review |
title_fullStr | Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review |
title_full_unstemmed | Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review |
title_short | Identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: A review |
title_sort | identification and validation of immune and prognosis-related genes in hepatocellular carcinoma: a review |
topic | 5400 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678506/ https://www.ncbi.nlm.nih.gov/pubmed/36401409 http://dx.doi.org/10.1097/MD.0000000000031814 |
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