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A pan-cancer analysis of the oncogenic role of ATP binding cassette subfamily E member 1 (ABCE1) in human tumors: An observational study

ATP-binding-cassette subfamily E member 1 (ABCE1) has been identified as an essential component of RNA translation and cell proliferation. However, studies on its role in pan-cancer are limited. Here, we aimed to characterize ABCE1 expression and its potential biological functions in cancer. ABCE1 e...

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Autores principales: Yu, Jihong, Ma, Haifen, He, Ji, Wang, Min, Yu, Bo, Ge, Shaonan, Dai, Zhibo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678580/
https://www.ncbi.nlm.nih.gov/pubmed/36401432
http://dx.doi.org/10.1097/MD.0000000000031849
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author Yu, Jihong
Ma, Haifen
He, Ji
Wang, Min
Yu, Bo
Ge, Shaonan
Dai, Zhibo
author_facet Yu, Jihong
Ma, Haifen
He, Ji
Wang, Min
Yu, Bo
Ge, Shaonan
Dai, Zhibo
author_sort Yu, Jihong
collection PubMed
description ATP-binding-cassette subfamily E member 1 (ABCE1) has been identified as an essential component of RNA translation and cell proliferation. However, studies on its role in pan-cancer are limited. Here, we aimed to characterize ABCE1 expression and its potential biological functions in cancer. ABCE1 expression was analyzed using RNA-seq data from The Cancer Genome Atlas (TCGA), the Genotype-Tissue Expression (GTEx) database, and the Clinical Proteomic Tumor Analysis Consortium database. The prognostic value of ABCE1 was analyzed using clinical survival data from TCGA. We downloaded the immune cell infiltration score of TCGA samples from published articles and online databases and performed a correlation analysis between immune cell infiltration levels, chemokines/chemokine receptors, and ABCE1 expression. We further assessed the association between ABCE1-correlated genes and their functions in pancreatic adenocarcinoma (PAAD). In general, ABCE1 gene expression was upregulated in most tumors. There were significant strong correlations between ABCE1 expression and tumor-infiltrating cells in cancers. Furthermore, RNA transport and ribosome biogenesis were significantly related to ABCE1 expression in PAAD. Our study revealed that ABCE1 may serve as a potential prognostic and immunological pan-cancer biomarker. Moreover, ABCE1 may be used in the development of a novel target for PAAD.
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spelling pubmed-96785802022-11-22 A pan-cancer analysis of the oncogenic role of ATP binding cassette subfamily E member 1 (ABCE1) in human tumors: An observational study Yu, Jihong Ma, Haifen He, Ji Wang, Min Yu, Bo Ge, Shaonan Dai, Zhibo Medicine (Baltimore) 5700 ATP-binding-cassette subfamily E member 1 (ABCE1) has been identified as an essential component of RNA translation and cell proliferation. However, studies on its role in pan-cancer are limited. Here, we aimed to characterize ABCE1 expression and its potential biological functions in cancer. ABCE1 expression was analyzed using RNA-seq data from The Cancer Genome Atlas (TCGA), the Genotype-Tissue Expression (GTEx) database, and the Clinical Proteomic Tumor Analysis Consortium database. The prognostic value of ABCE1 was analyzed using clinical survival data from TCGA. We downloaded the immune cell infiltration score of TCGA samples from published articles and online databases and performed a correlation analysis between immune cell infiltration levels, chemokines/chemokine receptors, and ABCE1 expression. We further assessed the association between ABCE1-correlated genes and their functions in pancreatic adenocarcinoma (PAAD). In general, ABCE1 gene expression was upregulated in most tumors. There were significant strong correlations between ABCE1 expression and tumor-infiltrating cells in cancers. Furthermore, RNA transport and ribosome biogenesis were significantly related to ABCE1 expression in PAAD. Our study revealed that ABCE1 may serve as a potential prognostic and immunological pan-cancer biomarker. Moreover, ABCE1 may be used in the development of a novel target for PAAD. Lippincott Williams & Wilkins 2022-11-18 /pmc/articles/PMC9678580/ /pubmed/36401432 http://dx.doi.org/10.1097/MD.0000000000031849 Text en Copyright © 2022 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial License 4.0 (CCBY-NC) (https://creativecommons.org/licenses/by-nc/4.0/) , where it is permissible to download, share, remix, transform, and buildup the work provided it is properly cited. The work cannot be used commercially without permission from the journal.
spellingShingle 5700
Yu, Jihong
Ma, Haifen
He, Ji
Wang, Min
Yu, Bo
Ge, Shaonan
Dai, Zhibo
A pan-cancer analysis of the oncogenic role of ATP binding cassette subfamily E member 1 (ABCE1) in human tumors: An observational study
title A pan-cancer analysis of the oncogenic role of ATP binding cassette subfamily E member 1 (ABCE1) in human tumors: An observational study
title_full A pan-cancer analysis of the oncogenic role of ATP binding cassette subfamily E member 1 (ABCE1) in human tumors: An observational study
title_fullStr A pan-cancer analysis of the oncogenic role of ATP binding cassette subfamily E member 1 (ABCE1) in human tumors: An observational study
title_full_unstemmed A pan-cancer analysis of the oncogenic role of ATP binding cassette subfamily E member 1 (ABCE1) in human tumors: An observational study
title_short A pan-cancer analysis of the oncogenic role of ATP binding cassette subfamily E member 1 (ABCE1) in human tumors: An observational study
title_sort pan-cancer analysis of the oncogenic role of atp binding cassette subfamily e member 1 (abce1) in human tumors: an observational study
topic 5700
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678580/
https://www.ncbi.nlm.nih.gov/pubmed/36401432
http://dx.doi.org/10.1097/MD.0000000000031849
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