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Virulence-related regulatory network of Pseudomonas syringae

Transcription factors (TFs) play important roles in regulating multiple biological processes by binding to promoter regions and regulating the global gene transcription levels. Pseudomonas syringae is a Gram-negative phytopathogenic bacterium harbouring 301 putative TFs in its genome, approximately...

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Autores principales: Huang, Jiadai, Yao, Chunyan, Sun, Yue, Ji, Quanjiang, Deng, Xin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678800/
https://www.ncbi.nlm.nih.gov/pubmed/36420163
http://dx.doi.org/10.1016/j.csbj.2022.11.011
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author Huang, Jiadai
Yao, Chunyan
Sun, Yue
Ji, Quanjiang
Deng, Xin
author_facet Huang, Jiadai
Yao, Chunyan
Sun, Yue
Ji, Quanjiang
Deng, Xin
author_sort Huang, Jiadai
collection PubMed
description Transcription factors (TFs) play important roles in regulating multiple biological processes by binding to promoter regions and regulating the global gene transcription levels. Pseudomonas syringae is a Gram-negative phytopathogenic bacterium harbouring 301 putative TFs in its genome, approximately 50 of which are responsible for virulence-related gene and pathway regulation. Over the past decades, RNA sequencing, chromatin immunoprecipitation sequencing, high-throughput systematic evolution of ligands by exponential enrichment, and other technologies have been applied to identify the functions of master regulators and their interactions in virulence-related pathways. This review summarises the recent advances in the regulatory networks of TFs involved in the type III secretion system (T3SS) and non-T3SS virulence-associated pathways, including motility, biofilm formation, quorum sensing, nucleotide-based secondary messengers, phytotoxins, siderophore production, and oxidative stress. Moreover, this review discusses the future perspectives in terms of TF-mediated pathogenesis mechanisms and provides novel insights that will help combat P. syringae infections based on the regulatory networks of TFs.
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spelling pubmed-96788002022-11-22 Virulence-related regulatory network of Pseudomonas syringae Huang, Jiadai Yao, Chunyan Sun, Yue Ji, Quanjiang Deng, Xin Comput Struct Biotechnol J Mini Review Transcription factors (TFs) play important roles in regulating multiple biological processes by binding to promoter regions and regulating the global gene transcription levels. Pseudomonas syringae is a Gram-negative phytopathogenic bacterium harbouring 301 putative TFs in its genome, approximately 50 of which are responsible for virulence-related gene and pathway regulation. Over the past decades, RNA sequencing, chromatin immunoprecipitation sequencing, high-throughput systematic evolution of ligands by exponential enrichment, and other technologies have been applied to identify the functions of master regulators and their interactions in virulence-related pathways. This review summarises the recent advances in the regulatory networks of TFs involved in the type III secretion system (T3SS) and non-T3SS virulence-associated pathways, including motility, biofilm formation, quorum sensing, nucleotide-based secondary messengers, phytotoxins, siderophore production, and oxidative stress. Moreover, this review discusses the future perspectives in terms of TF-mediated pathogenesis mechanisms and provides novel insights that will help combat P. syringae infections based on the regulatory networks of TFs. Research Network of Computational and Structural Biotechnology 2022-11-09 /pmc/articles/PMC9678800/ /pubmed/36420163 http://dx.doi.org/10.1016/j.csbj.2022.11.011 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Mini Review
Huang, Jiadai
Yao, Chunyan
Sun, Yue
Ji, Quanjiang
Deng, Xin
Virulence-related regulatory network of Pseudomonas syringae
title Virulence-related regulatory network of Pseudomonas syringae
title_full Virulence-related regulatory network of Pseudomonas syringae
title_fullStr Virulence-related regulatory network of Pseudomonas syringae
title_full_unstemmed Virulence-related regulatory network of Pseudomonas syringae
title_short Virulence-related regulatory network of Pseudomonas syringae
title_sort virulence-related regulatory network of pseudomonas syringae
topic Mini Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678800/
https://www.ncbi.nlm.nih.gov/pubmed/36420163
http://dx.doi.org/10.1016/j.csbj.2022.11.011
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