Cargando…
Virulence-related regulatory network of Pseudomonas syringae
Transcription factors (TFs) play important roles in regulating multiple biological processes by binding to promoter regions and regulating the global gene transcription levels. Pseudomonas syringae is a Gram-negative phytopathogenic bacterium harbouring 301 putative TFs in its genome, approximately...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Research Network of Computational and Structural Biotechnology
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678800/ https://www.ncbi.nlm.nih.gov/pubmed/36420163 http://dx.doi.org/10.1016/j.csbj.2022.11.011 |
_version_ | 1784834067285409792 |
---|---|
author | Huang, Jiadai Yao, Chunyan Sun, Yue Ji, Quanjiang Deng, Xin |
author_facet | Huang, Jiadai Yao, Chunyan Sun, Yue Ji, Quanjiang Deng, Xin |
author_sort | Huang, Jiadai |
collection | PubMed |
description | Transcription factors (TFs) play important roles in regulating multiple biological processes by binding to promoter regions and regulating the global gene transcription levels. Pseudomonas syringae is a Gram-negative phytopathogenic bacterium harbouring 301 putative TFs in its genome, approximately 50 of which are responsible for virulence-related gene and pathway regulation. Over the past decades, RNA sequencing, chromatin immunoprecipitation sequencing, high-throughput systematic evolution of ligands by exponential enrichment, and other technologies have been applied to identify the functions of master regulators and their interactions in virulence-related pathways. This review summarises the recent advances in the regulatory networks of TFs involved in the type III secretion system (T3SS) and non-T3SS virulence-associated pathways, including motility, biofilm formation, quorum sensing, nucleotide-based secondary messengers, phytotoxins, siderophore production, and oxidative stress. Moreover, this review discusses the future perspectives in terms of TF-mediated pathogenesis mechanisms and provides novel insights that will help combat P. syringae infections based on the regulatory networks of TFs. |
format | Online Article Text |
id | pubmed-9678800 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Research Network of Computational and Structural Biotechnology |
record_format | MEDLINE/PubMed |
spelling | pubmed-96788002022-11-22 Virulence-related regulatory network of Pseudomonas syringae Huang, Jiadai Yao, Chunyan Sun, Yue Ji, Quanjiang Deng, Xin Comput Struct Biotechnol J Mini Review Transcription factors (TFs) play important roles in regulating multiple biological processes by binding to promoter regions and regulating the global gene transcription levels. Pseudomonas syringae is a Gram-negative phytopathogenic bacterium harbouring 301 putative TFs in its genome, approximately 50 of which are responsible for virulence-related gene and pathway regulation. Over the past decades, RNA sequencing, chromatin immunoprecipitation sequencing, high-throughput systematic evolution of ligands by exponential enrichment, and other technologies have been applied to identify the functions of master regulators and their interactions in virulence-related pathways. This review summarises the recent advances in the regulatory networks of TFs involved in the type III secretion system (T3SS) and non-T3SS virulence-associated pathways, including motility, biofilm formation, quorum sensing, nucleotide-based secondary messengers, phytotoxins, siderophore production, and oxidative stress. Moreover, this review discusses the future perspectives in terms of TF-mediated pathogenesis mechanisms and provides novel insights that will help combat P. syringae infections based on the regulatory networks of TFs. Research Network of Computational and Structural Biotechnology 2022-11-09 /pmc/articles/PMC9678800/ /pubmed/36420163 http://dx.doi.org/10.1016/j.csbj.2022.11.011 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Mini Review Huang, Jiadai Yao, Chunyan Sun, Yue Ji, Quanjiang Deng, Xin Virulence-related regulatory network of Pseudomonas syringae |
title | Virulence-related regulatory network of Pseudomonas syringae |
title_full | Virulence-related regulatory network of Pseudomonas syringae |
title_fullStr | Virulence-related regulatory network of Pseudomonas syringae |
title_full_unstemmed | Virulence-related regulatory network of Pseudomonas syringae |
title_short | Virulence-related regulatory network of Pseudomonas syringae |
title_sort | virulence-related regulatory network of pseudomonas syringae |
topic | Mini Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9678800/ https://www.ncbi.nlm.nih.gov/pubmed/36420163 http://dx.doi.org/10.1016/j.csbj.2022.11.011 |
work_keys_str_mv | AT huangjiadai virulencerelatedregulatorynetworkofpseudomonassyringae AT yaochunyan virulencerelatedregulatorynetworkofpseudomonassyringae AT sunyue virulencerelatedregulatorynetworkofpseudomonassyringae AT jiquanjiang virulencerelatedregulatorynetworkofpseudomonassyringae AT dengxin virulencerelatedregulatorynetworkofpseudomonassyringae |