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DNA5mC Regulator-Mediated Molecular Clusters and Tumor Microenvironment Signatures in Glioblastoma

Growing evidence links DNA methylation to tumor immunity. The impact of DNA methylation (5 mC) on the microenvironment surrounding tumors and immunotherapy remains to be clarified. Through clustering gene expression of 20 DNA methylation regulators, this study aimed at systematically analyzing DNA m...

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Autores principales: Yu, Xinyu, Che, Yijun, Li, Weiyang, Zhang, Peng, Yu, Yunhu, Chen, Jialin, Gong, Ting, Cao, Fang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9679379/
https://www.ncbi.nlm.nih.gov/pubmed/36425533
http://dx.doi.org/10.3389/fcell.2022.1055567
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author Yu, Xinyu
Che, Yijun
Li, Weiyang
Zhang, Peng
Yu, Yunhu
Chen, Jialin
Gong, Ting
Cao, Fang
author_facet Yu, Xinyu
Che, Yijun
Li, Weiyang
Zhang, Peng
Yu, Yunhu
Chen, Jialin
Gong, Ting
Cao, Fang
author_sort Yu, Xinyu
collection PubMed
description Growing evidence links DNA methylation to tumor immunity. The impact of DNA methylation (5 mC) on the microenvironment surrounding tumors and immunotherapy remains to be clarified. Through clustering gene expression of 20 DNA methylation regulators, this study aimed at systematically analyzing DNA methylation regulator patterns and tumor microenvironment characteristics of TCGA-GBM patients. Various subtypes of glioblastoma exhibit different tumor microenvironments and DNA methylation patterns. Each DNA methylation modification was then assigned a DNA methylation score (DMS). High DMS was associated with a good prognosis. In contrast, the low DMS group had a relatively low survival rate. A correlation was also found between high DMS and enhanced immunotherapy efficacy in two immune checkpoint blocking treatment cohorts. To conclude, identifying DNA methylation regulation patterns may prove critical to understanding glioblastoma progression and differentiation, as well as future therapeutic targets.
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spelling pubmed-96793792022-11-23 DNA5mC Regulator-Mediated Molecular Clusters and Tumor Microenvironment Signatures in Glioblastoma Yu, Xinyu Che, Yijun Li, Weiyang Zhang, Peng Yu, Yunhu Chen, Jialin Gong, Ting Cao, Fang Front Cell Dev Biol Cell and Developmental Biology Growing evidence links DNA methylation to tumor immunity. The impact of DNA methylation (5 mC) on the microenvironment surrounding tumors and immunotherapy remains to be clarified. Through clustering gene expression of 20 DNA methylation regulators, this study aimed at systematically analyzing DNA methylation regulator patterns and tumor microenvironment characteristics of TCGA-GBM patients. Various subtypes of glioblastoma exhibit different tumor microenvironments and DNA methylation patterns. Each DNA methylation modification was then assigned a DNA methylation score (DMS). High DMS was associated with a good prognosis. In contrast, the low DMS group had a relatively low survival rate. A correlation was also found between high DMS and enhanced immunotherapy efficacy in two immune checkpoint blocking treatment cohorts. To conclude, identifying DNA methylation regulation patterns may prove critical to understanding glioblastoma progression and differentiation, as well as future therapeutic targets. Frontiers Media S.A. 2022-11-08 /pmc/articles/PMC9679379/ /pubmed/36425533 http://dx.doi.org/10.3389/fcell.2022.1055567 Text en Copyright © 2022 Yu, Che, Li, Zhang, Yu, Chen, Gong and Cao. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Yu, Xinyu
Che, Yijun
Li, Weiyang
Zhang, Peng
Yu, Yunhu
Chen, Jialin
Gong, Ting
Cao, Fang
DNA5mC Regulator-Mediated Molecular Clusters and Tumor Microenvironment Signatures in Glioblastoma
title DNA5mC Regulator-Mediated Molecular Clusters and Tumor Microenvironment Signatures in Glioblastoma
title_full DNA5mC Regulator-Mediated Molecular Clusters and Tumor Microenvironment Signatures in Glioblastoma
title_fullStr DNA5mC Regulator-Mediated Molecular Clusters and Tumor Microenvironment Signatures in Glioblastoma
title_full_unstemmed DNA5mC Regulator-Mediated Molecular Clusters and Tumor Microenvironment Signatures in Glioblastoma
title_short DNA5mC Regulator-Mediated Molecular Clusters and Tumor Microenvironment Signatures in Glioblastoma
title_sort dna5mc regulator-mediated molecular clusters and tumor microenvironment signatures in glioblastoma
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9679379/
https://www.ncbi.nlm.nih.gov/pubmed/36425533
http://dx.doi.org/10.3389/fcell.2022.1055567
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