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RNA-seq data of Aspergillus tubingensis NBRC 31125 in carbon catabolite repressor related to xylanase production
Aspergillus tubingensis NBRC 31125 is a prolific producer of endo-xylanase and β-xylosidase. However, the presence of glucose in the medium causes carbon catabolite repression (CCR) which inhibits the secretion of those enzymes. CCR in Aspergillus has been investigated in several ways. However, ther...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9679690/ https://www.ncbi.nlm.nih.gov/pubmed/36426064 http://dx.doi.org/10.1016/j.dib.2022.108700 |
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author | Krisnawati, Ririn Cahyanto, Muhammad Nur Sardjono, Sadjono Suroto, Dian Anggaraini Widada, Jaka |
author_facet | Krisnawati, Ririn Cahyanto, Muhammad Nur Sardjono, Sadjono Suroto, Dian Anggaraini Widada, Jaka |
author_sort | Krisnawati, Ririn |
collection | PubMed |
description | Aspergillus tubingensis NBRC 31125 is a prolific producer of endo-xylanase and β-xylosidase. However, the presence of glucose in the medium causes carbon catabolite repression (CCR) which inhibits the secretion of those enzymes. CCR in Aspergillus has been investigated in several ways. However, there are currently not any molecular data are available regarding the CCR of A. tubingensis in the xylan and glucose medium. Therefore, this research focuses on this aspect. The RNA of the strain was extracted in repressive condition, followed by sequencing using the Illumina NextSeq550 platform and reference assembly. The RNA-seq raw reads were submitted to the NCBI website's Sequence Read Archive database under the accession numbers SRR15412365 and SRR15412366, respectively. The data provide information for differentiating the response of xylanase and other enzymes production with and without glucose addition. The transcriptomics data can also be used to understand the xylan metabolism and CCR in Aspergillus |
format | Online Article Text |
id | pubmed-9679690 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-96796902022-11-23 RNA-seq data of Aspergillus tubingensis NBRC 31125 in carbon catabolite repressor related to xylanase production Krisnawati, Ririn Cahyanto, Muhammad Nur Sardjono, Sadjono Suroto, Dian Anggaraini Widada, Jaka Data Brief Data Article Aspergillus tubingensis NBRC 31125 is a prolific producer of endo-xylanase and β-xylosidase. However, the presence of glucose in the medium causes carbon catabolite repression (CCR) which inhibits the secretion of those enzymes. CCR in Aspergillus has been investigated in several ways. However, there are currently not any molecular data are available regarding the CCR of A. tubingensis in the xylan and glucose medium. Therefore, this research focuses on this aspect. The RNA of the strain was extracted in repressive condition, followed by sequencing using the Illumina NextSeq550 platform and reference assembly. The RNA-seq raw reads were submitted to the NCBI website's Sequence Read Archive database under the accession numbers SRR15412365 and SRR15412366, respectively. The data provide information for differentiating the response of xylanase and other enzymes production with and without glucose addition. The transcriptomics data can also be used to understand the xylan metabolism and CCR in Aspergillus Elsevier 2022-10-26 /pmc/articles/PMC9679690/ /pubmed/36426064 http://dx.doi.org/10.1016/j.dib.2022.108700 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Krisnawati, Ririn Cahyanto, Muhammad Nur Sardjono, Sadjono Suroto, Dian Anggaraini Widada, Jaka RNA-seq data of Aspergillus tubingensis NBRC 31125 in carbon catabolite repressor related to xylanase production |
title | RNA-seq data of Aspergillus tubingensis NBRC 31125 in carbon catabolite repressor related to xylanase production |
title_full | RNA-seq data of Aspergillus tubingensis NBRC 31125 in carbon catabolite repressor related to xylanase production |
title_fullStr | RNA-seq data of Aspergillus tubingensis NBRC 31125 in carbon catabolite repressor related to xylanase production |
title_full_unstemmed | RNA-seq data of Aspergillus tubingensis NBRC 31125 in carbon catabolite repressor related to xylanase production |
title_short | RNA-seq data of Aspergillus tubingensis NBRC 31125 in carbon catabolite repressor related to xylanase production |
title_sort | rna-seq data of aspergillus tubingensis nbrc 31125 in carbon catabolite repressor related to xylanase production |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9679690/ https://www.ncbi.nlm.nih.gov/pubmed/36426064 http://dx.doi.org/10.1016/j.dib.2022.108700 |
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