Cargando…

Environmental DNA sequencing dataset from Lake Erie algal blooms using Oxford Nanopore MinION

Here we describe a publicly available environmental DNA (eDNA) sequence dataset, consisting of samples collected from a National Oceanic and Atmospheric Administration (NOAA) Great Lakes Environmental Research Laboratory (GLERL) on Lake Erie. We sequenced samples drawn from before, during, and after...

Descripción completa

Detalles Bibliográficos
Autores principales:	Koeppel, Alexander F., Goodrum, William J., Steffen, Morgan M., Wurch, Louie L., Turner, Stephen D.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2022
Materias:	Data Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9679703/ https://www.ncbi.nlm.nih.gov/pubmed/36425971 http://dx.doi.org/10.1016/j.dib.2022.108688

Ejemplares similares

Assessing the performance of the Oxford Nanopore Technologies MinION
por: Laver, T., et al.
Publicado: (2015)

Oxford Nanopore MinION Sequencing and Genome Assembly
por: Lu, Hengyun, et al.
Publicado: (2016)

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
por: Jain, Miten, et al.
Publicado: (2016)

De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing
por: Dutreux, Fabien, et al.
Publicado: (2018)

Erratum to: The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
por: Jain, Miten, et al.
Publicado: (2016)

Oxford Nanopore MinION Direct RNA-Seq for Systems Biology
por: Pyatnitskiy, Mikhail A., et al.
Publicado: (2021)

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
por: Quick, Joshua, et al.
Publicado: (2014)

Dataset from de novo transcriptome assembly of Myristica fatua leaves using MinION nanopore sequencer
por: Matra, Deden Derajat, et al.
Publicado: (2022)

Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes
por: Judge, Kim, et al.
Publicado: (2015)

Evaluation of Oxford Nanopore MinION RNA-Seq Performance for Human Primary Cells
por: Massaiu, Ilaria, et al.
Publicado: (2021)

Assessing the utility of the Oxford Nanopore MinION for snake venom gland cDNA sequencing
por: Hargreaves, Adam D., et al.
Publicado: (2015)

Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations
por: Oikonomopoulos, Spyros, et al.
Publicado: (2016)

Evaluation of Oxford Nanopore’s MinION Sequencing Device for Microbial Whole Genome Sequencing Applications
por: Tyler, Andrea D., et al.
Publicado: (2018)

Evaluation of the detection of GBA missense mutations and other variants using the Oxford Nanopore MinION
por: Leija‐Salazar, Melissa, et al.
Publicado: (2019)

Complete sequence verification of plasmid DNA using the Oxford Nanopore Technologies’ MinION device
por: Brown, Scott D., et al.
Publicado: (2023)

MinION nanopore sequencing of an influenza genome
por: Wang, Jing, et al.
Publicado: (2015)

Updates and Comparative Analysis of the Mitochondrial Genomes of Paracoccidioides spp. Using Oxford Nanopore MinION Sequencing
por: Misas, Elizabeth, et al.
Publicado: (2020)

Portable Rabies Virus Sequencing in Canine Rabies Endemic Countries Using the Oxford Nanopore MinION
por: Gigante, Crystal M., et al.
Publicado: (2020)

Calling and Phasing of Single-Nucleotide and Structural Variants of the LDLR Gene Using Oxford Nanopore MinION
por: Nazarenko, Maria S., et al.
Publicado: (2023)

Spatiotemporal variability and environmental factors of harmful algal blooms (HABs) over western Lake Erie
por: Tian, Di, et al.
Publicado: (2017)

Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches
por: George, Sophie, et al.
Publicado: (2017)

Corrigendum: Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches
por: George, Sophie, et al.
Publicado: (2018)

Metagenome of a Bronchoalveolar Lavage Fluid Sample from a Confirmed COVID-19 Case in Quito, Ecuador, Obtained Using Oxford Nanopore MinION Technology
por: Márquez, Sully, et al.
Publicado: (2020)

Antimicrobial resistance prediction and phylogenetic analysis of Neisseria gonorrhoeae isolates using the Oxford Nanopore MinION sequencer
por: Golparian, Daniel, et al.
Publicado: (2018)

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
por: Istace, Benjamin, et al.
Publicado: (2017)

Improved data analysis for the MinION nanopore sequencer
por: Jain, Miten, et al.
Publicado: (2015)

Interannual Variability of Cyanobacterial Blooms in Lake Erie
por: Stumpf, Richard P., et al.
Publicado: (2012)

NanoDJ: a Dockerized Jupyter notebook for interactive Oxford Nanopore MinION sequence manipulation and genome assembly
por: Rodríguez-Pérez, Héctor, et al.
Publicado: (2019)

First Draft Genome of the Trypanosomatid Herpetomonas muscarum ingenoplastis through MinION Oxford Nanopore Technology and Illumina Sequencing
por: d’Avila-Levy, Claudia M., et al.
Publicado: (2020)

Fast Identification Method for Screening Bacteria from Faecal Samples Using Oxford Nanopore Technologies MinION Sequencing
por: Borges, Ana Sofia G., et al.
Publicado: (2023)

A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data
por: Risse, Judith, et al.
Publicado: (2015)

Forensic SNP Genotyping using Nanopore MinION Sequencing
por: Cornelis, Senne, et al.
Publicado: (2017)

Oxford Nanopore MinION Sequencing Enables Rapid Whole Genome Assembly of Rickettsia typhi in a Resource-Limited Setting
por: Elliott, Ivo, et al.
Publicado: (2020)

Use of Oxford Nanopore MinION to generate full-length sequences of the Blastocystis small subunit (SSU) rRNA gene
por: Maloney, Jenny G., et al.
Publicado: (2020)

MinION 16S datasets of a commercially available microbial community enables the evaluation of DNA extractions and data analyses
por: Mann, B.C., et al.
Publicado: (2021)

Scaffolding of a bacterial genome using MinION nanopore sequencing
por: Karlsson, E., et al.
Publicado: (2015)

MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach
por: Brown, Bonnie L., et al.
Publicado: (2017)

Rapid on-site detection of harmful algal blooms: real-time cyanobacteria identification using Oxford Nanopore sequencing
por: Potvin, Marianne, et al.
Publicado: (2023)

Genome Sequences of Six SARS-CoV-2 Strains Isolated in Morocco, Obtained Using Oxford Nanopore MinION Technology
por: Laamarti, Meriem, et al.
Publicado: (2020)

The first genome assembly of fungal pathogen Pyrenophora tritici-repentis race 1 isolate using Oxford Nanopore MinION sequencing
por: Moolhuijzen, Paula, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_qks5uc6mqouhfe57sg591tu2lp