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Draft genome sequence of Thermovorax subterraneus 70B(T), a thermophile isolated from a geothermally active underground mine that produces hydrogen

Thermovorax subterraneus 70B(T) is a thermophile found in a geothermically active underground mine. The strain 70B(T) belongs to the class of Clostridia, order of Thermosediminibacterales, and family of Thermosediminibacteraceae. Strain 70B(T) was the only type strain since the genus was discovered...

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Autores principales: Goh, Kian Mau, Liew, Kok Jun, Shahar, Saleha, Zakaria, Iffah Izzati, Kahar, Ummirul Mukminin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9679718/
https://www.ncbi.nlm.nih.gov/pubmed/36425965
http://dx.doi.org/10.1016/j.dib.2022.108695
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author Goh, Kian Mau
Liew, Kok Jun
Shahar, Saleha
Zakaria, Iffah Izzati
Kahar, Ummirul Mukminin
author_facet Goh, Kian Mau
Liew, Kok Jun
Shahar, Saleha
Zakaria, Iffah Izzati
Kahar, Ummirul Mukminin
author_sort Goh, Kian Mau
collection PubMed
description Thermovorax subterraneus 70B(T) is a thermophile found in a geothermically active underground mine. The strain 70B(T) belongs to the class of Clostridia, order of Thermosediminibacterales, and family of Thermosediminibacteraceae. Strain 70B(T) was the only type strain since the genus was discovered >10 years ago. Strain 70B(T) was compared to strains from other genera in terms of its phenotypics, chemotaxonomics, and phylogenetics (16S rRNA gene) in previous studies. However, the genome sequence of this strain has not been described. We herein described the genome sequence of strain 70B(T). In total, the assembled genome of strain 70B(T) has a size of 2,451,552 bp, contributed by 44 contigs, with a coverage of 445X, a N50 of 86,294 bp, and a GC% of 43.8. A total of 2,540 genes were encoded in the genome, including 2,431 protein-coding sequences, 46 pseudogenes, and 63 RNA genes. Through the Cluster of Orthologous Groups (COGs) analysis, a total of 2,404 protein-coding genes were functionally assigned to COGs in the genome of strain 70B(T). Among the members of Thermosediminibacteraceae family, strain 70B(T) has the closest relationship to Caldanaerovirga acetigignens JW/SA-NV4(T) based on the genome-to-genome comparison indexes (i.e., ANI, dDDH, AAI, and POCP). An earlier study reported that strain 70B(T) could produce hydrogen. We discovered genes encoding [FeFe] hydrogenase through gene mining analysis. For future research, this genome data will be used as a reference for all matters pertaining to the genus Thermovorax and family Thermosediminibacteraceae.
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spelling pubmed-96797182022-11-23 Draft genome sequence of Thermovorax subterraneus 70B(T), a thermophile isolated from a geothermally active underground mine that produces hydrogen Goh, Kian Mau Liew, Kok Jun Shahar, Saleha Zakaria, Iffah Izzati Kahar, Ummirul Mukminin Data Brief Data Article Thermovorax subterraneus 70B(T) is a thermophile found in a geothermically active underground mine. The strain 70B(T) belongs to the class of Clostridia, order of Thermosediminibacterales, and family of Thermosediminibacteraceae. Strain 70B(T) was the only type strain since the genus was discovered >10 years ago. Strain 70B(T) was compared to strains from other genera in terms of its phenotypics, chemotaxonomics, and phylogenetics (16S rRNA gene) in previous studies. However, the genome sequence of this strain has not been described. We herein described the genome sequence of strain 70B(T). In total, the assembled genome of strain 70B(T) has a size of 2,451,552 bp, contributed by 44 contigs, with a coverage of 445X, a N50 of 86,294 bp, and a GC% of 43.8. A total of 2,540 genes were encoded in the genome, including 2,431 protein-coding sequences, 46 pseudogenes, and 63 RNA genes. Through the Cluster of Orthologous Groups (COGs) analysis, a total of 2,404 protein-coding genes were functionally assigned to COGs in the genome of strain 70B(T). Among the members of Thermosediminibacteraceae family, strain 70B(T) has the closest relationship to Caldanaerovirga acetigignens JW/SA-NV4(T) based on the genome-to-genome comparison indexes (i.e., ANI, dDDH, AAI, and POCP). An earlier study reported that strain 70B(T) could produce hydrogen. We discovered genes encoding [FeFe] hydrogenase through gene mining analysis. For future research, this genome data will be used as a reference for all matters pertaining to the genus Thermovorax and family Thermosediminibacteraceae. Elsevier 2022-10-25 /pmc/articles/PMC9679718/ /pubmed/36425965 http://dx.doi.org/10.1016/j.dib.2022.108695 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Goh, Kian Mau
Liew, Kok Jun
Shahar, Saleha
Zakaria, Iffah Izzati
Kahar, Ummirul Mukminin
Draft genome sequence of Thermovorax subterraneus 70B(T), a thermophile isolated from a geothermally active underground mine that produces hydrogen
title Draft genome sequence of Thermovorax subterraneus 70B(T), a thermophile isolated from a geothermally active underground mine that produces hydrogen
title_full Draft genome sequence of Thermovorax subterraneus 70B(T), a thermophile isolated from a geothermally active underground mine that produces hydrogen
title_fullStr Draft genome sequence of Thermovorax subterraneus 70B(T), a thermophile isolated from a geothermally active underground mine that produces hydrogen
title_full_unstemmed Draft genome sequence of Thermovorax subterraneus 70B(T), a thermophile isolated from a geothermally active underground mine that produces hydrogen
title_short Draft genome sequence of Thermovorax subterraneus 70B(T), a thermophile isolated from a geothermally active underground mine that produces hydrogen
title_sort draft genome sequence of thermovorax subterraneus 70b(t), a thermophile isolated from a geothermally active underground mine that produces hydrogen
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9679718/
https://www.ncbi.nlm.nih.gov/pubmed/36425965
http://dx.doi.org/10.1016/j.dib.2022.108695
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