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White blood cell detection, classification and analysis using phase imaging with computational specificity (PICS)
Treatment of blood smears with Wright’s stain is one of the most helpful tools in detecting white blood cell abnormalities. However, to diagnose leukocyte disorders, a clinical pathologist must perform a tedious, manual process of locating and identifying individual cells. Furthermore, the staining...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9681839/ https://www.ncbi.nlm.nih.gov/pubmed/36414631 http://dx.doi.org/10.1038/s41598-022-21250-z |
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author | Fanous, Michae J. He, Shenghua Sengupta, Sourya Tangella, Krishnarao Sobh, Nahil Anastasio, Mark A. Popescu, Gabriel |
author_facet | Fanous, Michae J. He, Shenghua Sengupta, Sourya Tangella, Krishnarao Sobh, Nahil Anastasio, Mark A. Popescu, Gabriel |
author_sort | Fanous, Michae J. |
collection | PubMed |
description | Treatment of blood smears with Wright’s stain is one of the most helpful tools in detecting white blood cell abnormalities. However, to diagnose leukocyte disorders, a clinical pathologist must perform a tedious, manual process of locating and identifying individual cells. Furthermore, the staining procedure requires considerable preparation time and clinical infrastructure, which is incompatible with point-of-care diagnosis. Thus, rapid and automated evaluations of unlabeled blood smears are highly desirable. In this study, we used color spatial light interference microcopy (cSLIM), a highly sensitive quantitative phase imaging (QPI) technique, coupled with deep learning tools, to localize, classify and segment white blood cells (WBCs) in blood smears. The concept of combining QPI label-free data with AI for the purpose of extracting cellular specificity has recently been introduced in the context of fluorescence imaging as phase imaging with computational specificity (PICS). We employed AI models to first translate SLIM images into brightfield micrographs, then ran parallel tasks of locating and labelling cells using EfficientNet, which is an object detection model. Next, WBC binary masks were created using U-net, a convolutional neural network that performs precise segmentation. After training on digitally stained brightfield images of blood smears with WBCs, we achieved a mean average precision of 75% for localizing and classifying neutrophils, eosinophils, lymphocytes, and monocytes, and an average pixel-wise majority-voting F1 score of 80% for determining the cell class from semantic segmentation maps. Therefore, PICS renders and analyzes synthetically stained blood smears rapidly, at a reduced cost of sample preparation, providing quantitative clinical information. |
format | Online Article Text |
id | pubmed-9681839 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-96818392022-11-24 White blood cell detection, classification and analysis using phase imaging with computational specificity (PICS) Fanous, Michae J. He, Shenghua Sengupta, Sourya Tangella, Krishnarao Sobh, Nahil Anastasio, Mark A. Popescu, Gabriel Sci Rep Article Treatment of blood smears with Wright’s stain is one of the most helpful tools in detecting white blood cell abnormalities. However, to diagnose leukocyte disorders, a clinical pathologist must perform a tedious, manual process of locating and identifying individual cells. Furthermore, the staining procedure requires considerable preparation time and clinical infrastructure, which is incompatible with point-of-care diagnosis. Thus, rapid and automated evaluations of unlabeled blood smears are highly desirable. In this study, we used color spatial light interference microcopy (cSLIM), a highly sensitive quantitative phase imaging (QPI) technique, coupled with deep learning tools, to localize, classify and segment white blood cells (WBCs) in blood smears. The concept of combining QPI label-free data with AI for the purpose of extracting cellular specificity has recently been introduced in the context of fluorescence imaging as phase imaging with computational specificity (PICS). We employed AI models to first translate SLIM images into brightfield micrographs, then ran parallel tasks of locating and labelling cells using EfficientNet, which is an object detection model. Next, WBC binary masks were created using U-net, a convolutional neural network that performs precise segmentation. After training on digitally stained brightfield images of blood smears with WBCs, we achieved a mean average precision of 75% for localizing and classifying neutrophils, eosinophils, lymphocytes, and monocytes, and an average pixel-wise majority-voting F1 score of 80% for determining the cell class from semantic segmentation maps. Therefore, PICS renders and analyzes synthetically stained blood smears rapidly, at a reduced cost of sample preparation, providing quantitative clinical information. Nature Publishing Group UK 2022-11-21 /pmc/articles/PMC9681839/ /pubmed/36414631 http://dx.doi.org/10.1038/s41598-022-21250-z Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Fanous, Michae J. He, Shenghua Sengupta, Sourya Tangella, Krishnarao Sobh, Nahil Anastasio, Mark A. Popescu, Gabriel White blood cell detection, classification and analysis using phase imaging with computational specificity (PICS) |
title | White blood cell detection, classification and analysis using phase imaging with computational specificity (PICS) |
title_full | White blood cell detection, classification and analysis using phase imaging with computational specificity (PICS) |
title_fullStr | White blood cell detection, classification and analysis using phase imaging with computational specificity (PICS) |
title_full_unstemmed | White blood cell detection, classification and analysis using phase imaging with computational specificity (PICS) |
title_short | White blood cell detection, classification and analysis using phase imaging with computational specificity (PICS) |
title_sort | white blood cell detection, classification and analysis using phase imaging with computational specificity (pics) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9681839/ https://www.ncbi.nlm.nih.gov/pubmed/36414631 http://dx.doi.org/10.1038/s41598-022-21250-z |
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