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Identifying susceptibility genes for essential hypertension by transcriptome-wide association study

Hypertension is a leading risk factor of cardiovascular disease and mortality in the population worldwide. Recently, hundreds of genomic loci were reported for hypertension by GWAS, however, the most SNPs are located in intergenic regions of genome, where a functional cause is difficult to determine...

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Autores principales: Huang, Lu-jie, Zhang, Qiao-xia, Valenzuela, Robert K., Xu, Jia-chen, Yan, Fang, Ma, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9682336/
https://www.ncbi.nlm.nih.gov/pubmed/36438602
http://dx.doi.org/10.1016/j.bbrep.2022.101387
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author Huang, Lu-jie
Zhang, Qiao-xia
Valenzuela, Robert K.
Xu, Jia-chen
Yan, Fang
Ma, Jie
author_facet Huang, Lu-jie
Zhang, Qiao-xia
Valenzuela, Robert K.
Xu, Jia-chen
Yan, Fang
Ma, Jie
author_sort Huang, Lu-jie
collection PubMed
description Hypertension is a leading risk factor of cardiovascular disease and mortality in the population worldwide. Recently, hundreds of genomic loci were reported for hypertension by GWAS, however, the most SNPs are located in intergenic regions of genome, where a functional cause is difficult to determine. In the current study, a TWAS of hypertension was conducted using 452,264 individuals including 84,640 patients. KEGG and GO enrichment analyses were performed for the hypertension-related genes identified via TWAS. PPI network analysis based on the STRING database was also performed to detect TWAS-identified genes in hypertension. We have identified 18,420 genes from the GWAS summary data, and of those 1010 non-overlapping genes expression were significantly associated with hypertension after FDR correction (PFDR <0.05) in four tissues (left heart ventricle, aorta, whole blood, and peripheral blood). The KEGG and GO terms were mostly related to autoimmune mechanisms, and the autoimmune-related pathways have also been enriched using GO analysis for PPI genes. We further performed Mendelian randomization analysis, and the results supported a significant association between autoimmunity and hypertension. Moreover, 15 novel hypertension-susceptible genes were identified in all tissues, and five of the genes (RBM6, HLA-DRB5, UHRF1BP1, LYZ, and TMEM116) were associated with autoimmune system, which provide further evidence supporting an autoimmune mechanism in hypertension. In summary, our study supports that an autoimmune mechanism plays an important role in the development of hypertension, and these findings will provide new biological insights that will assist in deciphering the molecular etiology of hypertension.
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spelling pubmed-96823362022-11-24 Identifying susceptibility genes for essential hypertension by transcriptome-wide association study Huang, Lu-jie Zhang, Qiao-xia Valenzuela, Robert K. Xu, Jia-chen Yan, Fang Ma, Jie Biochem Biophys Rep Research Article Hypertension is a leading risk factor of cardiovascular disease and mortality in the population worldwide. Recently, hundreds of genomic loci were reported for hypertension by GWAS, however, the most SNPs are located in intergenic regions of genome, where a functional cause is difficult to determine. In the current study, a TWAS of hypertension was conducted using 452,264 individuals including 84,640 patients. KEGG and GO enrichment analyses were performed for the hypertension-related genes identified via TWAS. PPI network analysis based on the STRING database was also performed to detect TWAS-identified genes in hypertension. We have identified 18,420 genes from the GWAS summary data, and of those 1010 non-overlapping genes expression were significantly associated with hypertension after FDR correction (PFDR <0.05) in four tissues (left heart ventricle, aorta, whole blood, and peripheral blood). The KEGG and GO terms were mostly related to autoimmune mechanisms, and the autoimmune-related pathways have also been enriched using GO analysis for PPI genes. We further performed Mendelian randomization analysis, and the results supported a significant association between autoimmunity and hypertension. Moreover, 15 novel hypertension-susceptible genes were identified in all tissues, and five of the genes (RBM6, HLA-DRB5, UHRF1BP1, LYZ, and TMEM116) were associated with autoimmune system, which provide further evidence supporting an autoimmune mechanism in hypertension. In summary, our study supports that an autoimmune mechanism plays an important role in the development of hypertension, and these findings will provide new biological insights that will assist in deciphering the molecular etiology of hypertension. Elsevier 2022-11-21 /pmc/articles/PMC9682336/ /pubmed/36438602 http://dx.doi.org/10.1016/j.bbrep.2022.101387 Text en © 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Huang, Lu-jie
Zhang, Qiao-xia
Valenzuela, Robert K.
Xu, Jia-chen
Yan, Fang
Ma, Jie
Identifying susceptibility genes for essential hypertension by transcriptome-wide association study
title Identifying susceptibility genes for essential hypertension by transcriptome-wide association study
title_full Identifying susceptibility genes for essential hypertension by transcriptome-wide association study
title_fullStr Identifying susceptibility genes for essential hypertension by transcriptome-wide association study
title_full_unstemmed Identifying susceptibility genes for essential hypertension by transcriptome-wide association study
title_short Identifying susceptibility genes for essential hypertension by transcriptome-wide association study
title_sort identifying susceptibility genes for essential hypertension by transcriptome-wide association study
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9682336/
https://www.ncbi.nlm.nih.gov/pubmed/36438602
http://dx.doi.org/10.1016/j.bbrep.2022.101387
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