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Application of Gaussian process regression as a surrogate modeling method to assess the dynamics of COVID-19 propagation

In this research, we aimed to assess the possibility of using surrogate modeling methods to replace time-consuming calculations related to modeling of COVID-19 dynamics. The Gaussian process regression (GPR) was used as a surrogate to replace detailed simulations by a COVID-19 multiagent model. Expe...

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Detalles Bibliográficos
Autores principales: Matveeva, Alexandra, Leonenko, Vasiliy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Published by Elsevier B.V. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9682405/
https://www.ncbi.nlm.nih.gov/pubmed/36437869
http://dx.doi.org/10.1016/j.procs.2022.11.018
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author Matveeva, Alexandra
Leonenko, Vasiliy
author_facet Matveeva, Alexandra
Leonenko, Vasiliy
author_sort Matveeva, Alexandra
collection PubMed
description In this research, we aimed to assess the possibility of using surrogate modeling methods to replace time-consuming calculations related to modeling of COVID-19 dynamics. The Gaussian process regression (GPR) was used as a surrogate to replace detailed simulations by a COVID-19 multiagent model. Experiments were conducted with various kernels, as a result, in accordance with the quality metrics of the models, kernels were identified in which the surrogate gives the most accurate result (Rational Quadratic kernel and Additive kernel). It was demonstrated that by smoothing the dynamics of COVID-19 propagation, it is possible to achieve greater accuracy in GPR training. The obtained results prove the potential possibility of using surrogate modeling methods to conduct an uncertainty quantification of the multiagent model of COVID-19 propagation.
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spelling pubmed-96824052022-11-23 Application of Gaussian process regression as a surrogate modeling method to assess the dynamics of COVID-19 propagation Matveeva, Alexandra Leonenko, Vasiliy Procedia Comput Sci Article In this research, we aimed to assess the possibility of using surrogate modeling methods to replace time-consuming calculations related to modeling of COVID-19 dynamics. The Gaussian process regression (GPR) was used as a surrogate to replace detailed simulations by a COVID-19 multiagent model. Experiments were conducted with various kernels, as a result, in accordance with the quality metrics of the models, kernels were identified in which the surrogate gives the most accurate result (Rational Quadratic kernel and Additive kernel). It was demonstrated that by smoothing the dynamics of COVID-19 propagation, it is possible to achieve greater accuracy in GPR training. The obtained results prove the potential possibility of using surrogate modeling methods to conduct an uncertainty quantification of the multiagent model of COVID-19 propagation. Published by Elsevier B.V. 2022 2022-11-23 /pmc/articles/PMC9682405/ /pubmed/36437869 http://dx.doi.org/10.1016/j.procs.2022.11.018 Text en © 2022 Published by Elsevier B.V. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Matveeva, Alexandra
Leonenko, Vasiliy
Application of Gaussian process regression as a surrogate modeling method to assess the dynamics of COVID-19 propagation
title Application of Gaussian process regression as a surrogate modeling method to assess the dynamics of COVID-19 propagation
title_full Application of Gaussian process regression as a surrogate modeling method to assess the dynamics of COVID-19 propagation
title_fullStr Application of Gaussian process regression as a surrogate modeling method to assess the dynamics of COVID-19 propagation
title_full_unstemmed Application of Gaussian process regression as a surrogate modeling method to assess the dynamics of COVID-19 propagation
title_short Application of Gaussian process regression as a surrogate modeling method to assess the dynamics of COVID-19 propagation
title_sort application of gaussian process regression as a surrogate modeling method to assess the dynamics of covid-19 propagation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9682405/
https://www.ncbi.nlm.nih.gov/pubmed/36437869
http://dx.doi.org/10.1016/j.procs.2022.11.018
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