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Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma

Clear cell renal cell carcinoma (ccRCC) is an immunogenic tumor, and investigating the immunorelated genes is essential. To investigate the immunoprognostic genes of ccRCC, we analyzed the data assimilated from a public database (The Cancer Genome Atlas (TCGA) database and the gene expression omnibu...

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Autores principales: Pan, Ziwen, Chang, Sheng, Chen, Song, Zhao, Daqiang, Zou, Zhiyu, Dai, Linrui, Hou, Yibo, Zhang, Qianqian, Yang, Yuanyuan, Chen, Zhishui, Zhang, Weijie, Zhao, Yuanyuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9683592/
https://www.ncbi.nlm.nih.gov/pubmed/36417422
http://dx.doi.org/10.1371/journal.pone.0272542
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author Pan, Ziwen
Chang, Sheng
Chen, Song
Zhao, Daqiang
Zou, Zhiyu
Dai, Linrui
Hou, Yibo
Zhang, Qianqian
Yang, Yuanyuan
Chen, Zhishui
Zhang, Weijie
Zhao, Yuanyuan
author_facet Pan, Ziwen
Chang, Sheng
Chen, Song
Zhao, Daqiang
Zou, Zhiyu
Dai, Linrui
Hou, Yibo
Zhang, Qianqian
Yang, Yuanyuan
Chen, Zhishui
Zhang, Weijie
Zhao, Yuanyuan
author_sort Pan, Ziwen
collection PubMed
description Clear cell renal cell carcinoma (ccRCC) is an immunogenic tumor, and investigating the immunorelated genes is essential. To investigate the immunoprognostic genes of ccRCC, we analyzed the data assimilated from a public database (The Cancer Genome Atlas (TCGA) database and the gene expression omnibus (GEO) database) using bioinformatics. Then, an immunoprognosis model was constructed to identify four hub genes with moderate predictive values for the prognosis of ccRCC patients. These four genes were associated with the prognosis of ccRCC patients based on Oncomine and Gena Expression Profiling Interactive Analysis (GEPIA) databases. The correlation analysis between the immune infiltrate, immune checkpoints, and immunotherapy and this immunoprognosis model showed that immune infiltration could predict the immunotherapy effects. We also conducted a quantitative real-time polymerase chain reaction analysis and found that the expressions of three hub genes were associated with tumor progression (P<0.1). In conclusion, four genes that may serve as potential biomarkers in ccRCC were identified with respect to prognosis.
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spelling pubmed-96835922022-11-24 Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma Pan, Ziwen Chang, Sheng Chen, Song Zhao, Daqiang Zou, Zhiyu Dai, Linrui Hou, Yibo Zhang, Qianqian Yang, Yuanyuan Chen, Zhishui Zhang, Weijie Zhao, Yuanyuan PLoS One Research Article Clear cell renal cell carcinoma (ccRCC) is an immunogenic tumor, and investigating the immunorelated genes is essential. To investigate the immunoprognostic genes of ccRCC, we analyzed the data assimilated from a public database (The Cancer Genome Atlas (TCGA) database and the gene expression omnibus (GEO) database) using bioinformatics. Then, an immunoprognosis model was constructed to identify four hub genes with moderate predictive values for the prognosis of ccRCC patients. These four genes were associated with the prognosis of ccRCC patients based on Oncomine and Gena Expression Profiling Interactive Analysis (GEPIA) databases. The correlation analysis between the immune infiltrate, immune checkpoints, and immunotherapy and this immunoprognosis model showed that immune infiltration could predict the immunotherapy effects. We also conducted a quantitative real-time polymerase chain reaction analysis and found that the expressions of three hub genes were associated with tumor progression (P<0.1). In conclusion, four genes that may serve as potential biomarkers in ccRCC were identified with respect to prognosis. Public Library of Science 2022-11-23 /pmc/articles/PMC9683592/ /pubmed/36417422 http://dx.doi.org/10.1371/journal.pone.0272542 Text en © 2022 Pan et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Pan, Ziwen
Chang, Sheng
Chen, Song
Zhao, Daqiang
Zou, Zhiyu
Dai, Linrui
Hou, Yibo
Zhang, Qianqian
Yang, Yuanyuan
Chen, Zhishui
Zhang, Weijie
Zhao, Yuanyuan
Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma
title Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma
title_full Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma
title_fullStr Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma
title_full_unstemmed Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma
title_short Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma
title_sort bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9683592/
https://www.ncbi.nlm.nih.gov/pubmed/36417422
http://dx.doi.org/10.1371/journal.pone.0272542
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