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Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma
Clear cell renal cell carcinoma (ccRCC) is an immunogenic tumor, and investigating the immunorelated genes is essential. To investigate the immunoprognostic genes of ccRCC, we analyzed the data assimilated from a public database (The Cancer Genome Atlas (TCGA) database and the gene expression omnibu...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9683592/ https://www.ncbi.nlm.nih.gov/pubmed/36417422 http://dx.doi.org/10.1371/journal.pone.0272542 |
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author | Pan, Ziwen Chang, Sheng Chen, Song Zhao, Daqiang Zou, Zhiyu Dai, Linrui Hou, Yibo Zhang, Qianqian Yang, Yuanyuan Chen, Zhishui Zhang, Weijie Zhao, Yuanyuan |
author_facet | Pan, Ziwen Chang, Sheng Chen, Song Zhao, Daqiang Zou, Zhiyu Dai, Linrui Hou, Yibo Zhang, Qianqian Yang, Yuanyuan Chen, Zhishui Zhang, Weijie Zhao, Yuanyuan |
author_sort | Pan, Ziwen |
collection | PubMed |
description | Clear cell renal cell carcinoma (ccRCC) is an immunogenic tumor, and investigating the immunorelated genes is essential. To investigate the immunoprognostic genes of ccRCC, we analyzed the data assimilated from a public database (The Cancer Genome Atlas (TCGA) database and the gene expression omnibus (GEO) database) using bioinformatics. Then, an immunoprognosis model was constructed to identify four hub genes with moderate predictive values for the prognosis of ccRCC patients. These four genes were associated with the prognosis of ccRCC patients based on Oncomine and Gena Expression Profiling Interactive Analysis (GEPIA) databases. The correlation analysis between the immune infiltrate, immune checkpoints, and immunotherapy and this immunoprognosis model showed that immune infiltration could predict the immunotherapy effects. We also conducted a quantitative real-time polymerase chain reaction analysis and found that the expressions of three hub genes were associated with tumor progression (P<0.1). In conclusion, four genes that may serve as potential biomarkers in ccRCC were identified with respect to prognosis. |
format | Online Article Text |
id | pubmed-9683592 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-96835922022-11-24 Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma Pan, Ziwen Chang, Sheng Chen, Song Zhao, Daqiang Zou, Zhiyu Dai, Linrui Hou, Yibo Zhang, Qianqian Yang, Yuanyuan Chen, Zhishui Zhang, Weijie Zhao, Yuanyuan PLoS One Research Article Clear cell renal cell carcinoma (ccRCC) is an immunogenic tumor, and investigating the immunorelated genes is essential. To investigate the immunoprognostic genes of ccRCC, we analyzed the data assimilated from a public database (The Cancer Genome Atlas (TCGA) database and the gene expression omnibus (GEO) database) using bioinformatics. Then, an immunoprognosis model was constructed to identify four hub genes with moderate predictive values for the prognosis of ccRCC patients. These four genes were associated with the prognosis of ccRCC patients based on Oncomine and Gena Expression Profiling Interactive Analysis (GEPIA) databases. The correlation analysis between the immune infiltrate, immune checkpoints, and immunotherapy and this immunoprognosis model showed that immune infiltration could predict the immunotherapy effects. We also conducted a quantitative real-time polymerase chain reaction analysis and found that the expressions of three hub genes were associated with tumor progression (P<0.1). In conclusion, four genes that may serve as potential biomarkers in ccRCC were identified with respect to prognosis. Public Library of Science 2022-11-23 /pmc/articles/PMC9683592/ /pubmed/36417422 http://dx.doi.org/10.1371/journal.pone.0272542 Text en © 2022 Pan et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Pan, Ziwen Chang, Sheng Chen, Song Zhao, Daqiang Zou, Zhiyu Dai, Linrui Hou, Yibo Zhang, Qianqian Yang, Yuanyuan Chen, Zhishui Zhang, Weijie Zhao, Yuanyuan Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma |
title | Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma |
title_full | Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma |
title_fullStr | Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma |
title_full_unstemmed | Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma |
title_short | Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma |
title_sort | bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9683592/ https://www.ncbi.nlm.nih.gov/pubmed/36417422 http://dx.doi.org/10.1371/journal.pone.0272542 |
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