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Development of markers using microsatellite loci of two rove beetle species, Paederus fuscipes Curtis and Aleochara (Aleochara) curtula Goeze (Coleoptera: Staphylinidae), followed by analyses of genetic diversity and population structure
BACKGROUND: The family Staphylinidae is the most speciose beetle group in the world. The outbreaks of two staphylinid species, Paederus fuscipes and Aleochara (Aleochara) curtula, were recently reported in South Korea. None of research about molecular markers and genetic diversity have been conducte...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer Nature Singapore
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9684238/ https://www.ncbi.nlm.nih.gov/pubmed/35982374 http://dx.doi.org/10.1007/s13258-022-01293-2 |
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author | Choi, Yeon‐Jae Yi, Jeesoo Lee, Chan-Jun Kim, Ji-Wook Jeon, Mi-Jeong Park, Jong-Seok Cho, Sung-Jin |
author_facet | Choi, Yeon‐Jae Yi, Jeesoo Lee, Chan-Jun Kim, Ji-Wook Jeon, Mi-Jeong Park, Jong-Seok Cho, Sung-Jin |
author_sort | Choi, Yeon‐Jae |
collection | PubMed |
description | BACKGROUND: The family Staphylinidae is the most speciose beetle group in the world. The outbreaks of two staphylinid species, Paederus fuscipes and Aleochara (Aleochara) curtula, were recently reported in South Korea. None of research about molecular markers and genetic diversity have been conducted in these two species. OBJECTIVE: To develop microsatellite markers and analyze the genetic diversity and population structures of two rove beetle species. METHODS: NGS was used to sequence whole genomes of two species, Paederus fuscipes and Aleochara (Aleochara) curtula. Microsatellite loci were selected with flanking primer sequences. Specimens of P. fuscipes and A. curtula were collected from three localities, respectively. Genetic diversity and population structure were analyzed using the newly developed microsatellite markers. RESULTS: The number of alleles ranged 5.727–6.636 (average 6.242) and 2.182–5.364 (average 4.091), expected heterozygosity ranged 0.560–0.582 (average 0.570) and 0.368–0.564 (average 0.498), observed heterozygosity ranged 0.458–0.497 (average 0.472) and 0.418–0.644 (average 0.537) in P. fuscipes and A. curtula, respectively. Population structure indicates that individuals of A. curtula are clustered to groups where they were collected, but those of P. fuscipes are not. CONCLUSION: Population structures of P. fuscipes were shallow. In A. curtula, however, it was apparent that the genetic compositions of the populations are different significantly depending on collection localities. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13258-022-01293-2. |
format | Online Article Text |
id | pubmed-9684238 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer Nature Singapore |
record_format | MEDLINE/PubMed |
spelling | pubmed-96842382022-11-25 Development of markers using microsatellite loci of two rove beetle species, Paederus fuscipes Curtis and Aleochara (Aleochara) curtula Goeze (Coleoptera: Staphylinidae), followed by analyses of genetic diversity and population structure Choi, Yeon‐Jae Yi, Jeesoo Lee, Chan-Jun Kim, Ji-Wook Jeon, Mi-Jeong Park, Jong-Seok Cho, Sung-Jin Genes Genomics Research Article BACKGROUND: The family Staphylinidae is the most speciose beetle group in the world. The outbreaks of two staphylinid species, Paederus fuscipes and Aleochara (Aleochara) curtula, were recently reported in South Korea. None of research about molecular markers and genetic diversity have been conducted in these two species. OBJECTIVE: To develop microsatellite markers and analyze the genetic diversity and population structures of two rove beetle species. METHODS: NGS was used to sequence whole genomes of two species, Paederus fuscipes and Aleochara (Aleochara) curtula. Microsatellite loci were selected with flanking primer sequences. Specimens of P. fuscipes and A. curtula were collected from three localities, respectively. Genetic diversity and population structure were analyzed using the newly developed microsatellite markers. RESULTS: The number of alleles ranged 5.727–6.636 (average 6.242) and 2.182–5.364 (average 4.091), expected heterozygosity ranged 0.560–0.582 (average 0.570) and 0.368–0.564 (average 0.498), observed heterozygosity ranged 0.458–0.497 (average 0.472) and 0.418–0.644 (average 0.537) in P. fuscipes and A. curtula, respectively. Population structure indicates that individuals of A. curtula are clustered to groups where they were collected, but those of P. fuscipes are not. CONCLUSION: Population structures of P. fuscipes were shallow. In A. curtula, however, it was apparent that the genetic compositions of the populations are different significantly depending on collection localities. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13258-022-01293-2. Springer Nature Singapore 2022-08-18 2022 /pmc/articles/PMC9684238/ /pubmed/35982374 http://dx.doi.org/10.1007/s13258-022-01293-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Article Choi, Yeon‐Jae Yi, Jeesoo Lee, Chan-Jun Kim, Ji-Wook Jeon, Mi-Jeong Park, Jong-Seok Cho, Sung-Jin Development of markers using microsatellite loci of two rove beetle species, Paederus fuscipes Curtis and Aleochara (Aleochara) curtula Goeze (Coleoptera: Staphylinidae), followed by analyses of genetic diversity and population structure |
title | Development of markers using microsatellite loci of two rove beetle species, Paederus fuscipes Curtis and Aleochara (Aleochara) curtula Goeze (Coleoptera: Staphylinidae), followed by analyses of genetic diversity and population structure |
title_full | Development of markers using microsatellite loci of two rove beetle species, Paederus fuscipes Curtis and Aleochara (Aleochara) curtula Goeze (Coleoptera: Staphylinidae), followed by analyses of genetic diversity and population structure |
title_fullStr | Development of markers using microsatellite loci of two rove beetle species, Paederus fuscipes Curtis and Aleochara (Aleochara) curtula Goeze (Coleoptera: Staphylinidae), followed by analyses of genetic diversity and population structure |
title_full_unstemmed | Development of markers using microsatellite loci of two rove beetle species, Paederus fuscipes Curtis and Aleochara (Aleochara) curtula Goeze (Coleoptera: Staphylinidae), followed by analyses of genetic diversity and population structure |
title_short | Development of markers using microsatellite loci of two rove beetle species, Paederus fuscipes Curtis and Aleochara (Aleochara) curtula Goeze (Coleoptera: Staphylinidae), followed by analyses of genetic diversity and population structure |
title_sort | development of markers using microsatellite loci of two rove beetle species, paederus fuscipes curtis and aleochara (aleochara) curtula goeze (coleoptera: staphylinidae), followed by analyses of genetic diversity and population structure |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9684238/ https://www.ncbi.nlm.nih.gov/pubmed/35982374 http://dx.doi.org/10.1007/s13258-022-01293-2 |
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