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The first cultivated representatives of the actinobacterial lineage OPB41 isolated from subsurface environments constitute a novel order Anaerosomatales

The continental subsurface harbors microbial populations highly enriched in uncultured taxa. OPB41 is an uncultured order-level phylogenetic lineage within the actinobacterial class Coriobacteriia. OPB41 bacteria have a wide geographical distribution, but the physiology and metabolic traits of this...

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Autores principales: Khomyakova, Maria A., Zavarzina, Daria G., Merkel, Alexander Y., Klyukina, Alexandra A., Pikhtereva, Valeria A., Gavrilov, Sergey N., Slobodkin, Alexander I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9686372/
https://www.ncbi.nlm.nih.gov/pubmed/36439822
http://dx.doi.org/10.3389/fmicb.2022.1047580
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author Khomyakova, Maria A.
Zavarzina, Daria G.
Merkel, Alexander Y.
Klyukina, Alexandra A.
Pikhtereva, Valeria A.
Gavrilov, Sergey N.
Slobodkin, Alexander I.
author_facet Khomyakova, Maria A.
Zavarzina, Daria G.
Merkel, Alexander Y.
Klyukina, Alexandra A.
Pikhtereva, Valeria A.
Gavrilov, Sergey N.
Slobodkin, Alexander I.
author_sort Khomyakova, Maria A.
collection PubMed
description The continental subsurface harbors microbial populations highly enriched in uncultured taxa. OPB41 is an uncultured order-level phylogenetic lineage within the actinobacterial class Coriobacteriia. OPB41 bacteria have a wide geographical distribution, but the physiology and metabolic traits of this cosmopolitan group remain elusive. From two contrasting subsurface environments, a terrestrial mud volcano and a deep subsurface aquifer, located in the central part of Eurasia, within the Caucasus petroleum region, we have isolated two pure cultures of anaerobic actinobacteria belonging to OPB41. The cells of both strains are small non-motile rods forming numerous pili-like appendages. Strain M08DHB(T) is mesophilic, while strain Es71-Z0120(T) is a true thermophile having a broad temperature range for growth (25–77°C). Strain M08DHB(T) anaerobically reduces sulfur compounds and utilizes an aromatic compound 3,4-dihydroxybenzoic acid. Strain Es71-Z0120(T) is an obligate dissimilatory Fe(III) reducer that is unable to utilize aromatic compounds. Both isolates grow lithotrophically and consume molecular hydrogen or formate using either thiosulfate, elemental sulfur, or Fe(III) as an electron acceptor. Genomes of the strains encode the putative reductive glycine pathway for autotrophic CO(2) fixation, Ni-Fe hydrogenases, putative thiosulfate/polysulfide reductases, and multiheme c-type cytochromes presumably involved in dissimilatory Fe(III) reduction. We propose to assign the isolated strains to the novel taxa of the species–order levels and describe strain M08DHB(T) as Anaerosoma tenue gen. nov., sp. nov., and strain Es71-Z0120(T) as Parvivirga hydrogeniphila gen. nov., sp. nov., being members of Anaerosomatales ord. nov. This work expands the knowledge of the diversity, metabolic functions, and ecological role of the phylum Actinomycetota.
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spelling pubmed-96863722022-11-25 The first cultivated representatives of the actinobacterial lineage OPB41 isolated from subsurface environments constitute a novel order Anaerosomatales Khomyakova, Maria A. Zavarzina, Daria G. Merkel, Alexander Y. Klyukina, Alexandra A. Pikhtereva, Valeria A. Gavrilov, Sergey N. Slobodkin, Alexander I. Front Microbiol Microbiology The continental subsurface harbors microbial populations highly enriched in uncultured taxa. OPB41 is an uncultured order-level phylogenetic lineage within the actinobacterial class Coriobacteriia. OPB41 bacteria have a wide geographical distribution, but the physiology and metabolic traits of this cosmopolitan group remain elusive. From two contrasting subsurface environments, a terrestrial mud volcano and a deep subsurface aquifer, located in the central part of Eurasia, within the Caucasus petroleum region, we have isolated two pure cultures of anaerobic actinobacteria belonging to OPB41. The cells of both strains are small non-motile rods forming numerous pili-like appendages. Strain M08DHB(T) is mesophilic, while strain Es71-Z0120(T) is a true thermophile having a broad temperature range for growth (25–77°C). Strain M08DHB(T) anaerobically reduces sulfur compounds and utilizes an aromatic compound 3,4-dihydroxybenzoic acid. Strain Es71-Z0120(T) is an obligate dissimilatory Fe(III) reducer that is unable to utilize aromatic compounds. Both isolates grow lithotrophically and consume molecular hydrogen or formate using either thiosulfate, elemental sulfur, or Fe(III) as an electron acceptor. Genomes of the strains encode the putative reductive glycine pathway for autotrophic CO(2) fixation, Ni-Fe hydrogenases, putative thiosulfate/polysulfide reductases, and multiheme c-type cytochromes presumably involved in dissimilatory Fe(III) reduction. We propose to assign the isolated strains to the novel taxa of the species–order levels and describe strain M08DHB(T) as Anaerosoma tenue gen. nov., sp. nov., and strain Es71-Z0120(T) as Parvivirga hydrogeniphila gen. nov., sp. nov., being members of Anaerosomatales ord. nov. This work expands the knowledge of the diversity, metabolic functions, and ecological role of the phylum Actinomycetota. Frontiers Media S.A. 2022-11-10 /pmc/articles/PMC9686372/ /pubmed/36439822 http://dx.doi.org/10.3389/fmicb.2022.1047580 Text en Copyright © 2022 Khomyakova, Zavarzina, Merkel, Klyukina, Pikhtereva, Gavrilov and Slobodkin. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Khomyakova, Maria A.
Zavarzina, Daria G.
Merkel, Alexander Y.
Klyukina, Alexandra A.
Pikhtereva, Valeria A.
Gavrilov, Sergey N.
Slobodkin, Alexander I.
The first cultivated representatives of the actinobacterial lineage OPB41 isolated from subsurface environments constitute a novel order Anaerosomatales
title The first cultivated representatives of the actinobacterial lineage OPB41 isolated from subsurface environments constitute a novel order Anaerosomatales
title_full The first cultivated representatives of the actinobacterial lineage OPB41 isolated from subsurface environments constitute a novel order Anaerosomatales
title_fullStr The first cultivated representatives of the actinobacterial lineage OPB41 isolated from subsurface environments constitute a novel order Anaerosomatales
title_full_unstemmed The first cultivated representatives of the actinobacterial lineage OPB41 isolated from subsurface environments constitute a novel order Anaerosomatales
title_short The first cultivated representatives of the actinobacterial lineage OPB41 isolated from subsurface environments constitute a novel order Anaerosomatales
title_sort first cultivated representatives of the actinobacterial lineage opb41 isolated from subsurface environments constitute a novel order anaerosomatales
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9686372/
https://www.ncbi.nlm.nih.gov/pubmed/36439822
http://dx.doi.org/10.3389/fmicb.2022.1047580
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