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Prognostic models for COVID-19 needed updating to warrant transportability over time and space

BACKGROUND: Supporting decisions for patients who present to the emergency department (ED) with COVID-19 requires accurate prognostication. We aimed to evaluate prognostic models for predicting outcomes in hospitalized patients with COVID-19, in different locations and across time. METHODS: We inclu...

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Autores principales: van Klaveren, David, Zanos, Theodoros P., Nelson, Jason, Levy, Todd J., Park, Jinny G., Retel Helmrich, Isabel R. A., Rietjens, Judith A. C., Basile, Melissa J., Hajizadeh, Negin, Lingsma, Hester F., Kent, David M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9686462/
https://www.ncbi.nlm.nih.gov/pubmed/36424619
http://dx.doi.org/10.1186/s12916-022-02651-3
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author van Klaveren, David
Zanos, Theodoros P.
Nelson, Jason
Levy, Todd J.
Park, Jinny G.
Retel Helmrich, Isabel R. A.
Rietjens, Judith A. C.
Basile, Melissa J.
Hajizadeh, Negin
Lingsma, Hester F.
Kent, David M.
author_facet van Klaveren, David
Zanos, Theodoros P.
Nelson, Jason
Levy, Todd J.
Park, Jinny G.
Retel Helmrich, Isabel R. A.
Rietjens, Judith A. C.
Basile, Melissa J.
Hajizadeh, Negin
Lingsma, Hester F.
Kent, David M.
author_sort van Klaveren, David
collection PubMed
description BACKGROUND: Supporting decisions for patients who present to the emergency department (ED) with COVID-19 requires accurate prognostication. We aimed to evaluate prognostic models for predicting outcomes in hospitalized patients with COVID-19, in different locations and across time. METHODS: We included patients who presented to the ED with suspected COVID-19 and were admitted to 12 hospitals in the New York City (NYC) area and 4 large Dutch hospitals. We used second-wave patients who presented between September and December 2020 (2137 and 3252 in NYC and the Netherlands, respectively) to evaluate models that were developed on first-wave patients who presented between March and August 2020 (12,163 and 5831). We evaluated two prognostic models for in-hospital death: The Northwell COVID-19 Survival (NOCOS) model was developed on NYC data and the COVID Outcome Prediction in the Emergency Department (COPE) model was developed on Dutch data. These models were validated on subsequent second-wave data at the same site (temporal validation) and at the other site (geographic validation). We assessed model performance by the Area Under the receiver operating characteristic Curve (AUC), by the E-statistic, and by net benefit. RESULTS: Twenty-eight-day mortality was considerably higher in the NYC first-wave data (21.0%), compared to the second-wave (10.1%) and the Dutch data (first wave 10.8%; second wave 10.0%). COPE discriminated well at temporal validation (AUC 0.82), with excellent calibration (E-statistic 0.8%). At geographic validation, discrimination was satisfactory (AUC 0.78), but with moderate over-prediction of mortality risk, particularly in higher-risk patients (E-statistic 2.9%). While discrimination was adequate when NOCOS was tested on second-wave NYC data (AUC 0.77), NOCOS systematically overestimated the mortality risk (E-statistic 5.1%). Discrimination in the Dutch data was good (AUC 0.81), but with over-prediction of risk, particularly in lower-risk patients (E-statistic 4.0%). Recalibration of COPE and NOCOS led to limited net benefit improvement in Dutch data, but to substantial net benefit improvement in NYC data. CONCLUSIONS: NOCOS performed moderately worse than COPE, probably reflecting unique aspects of the early pandemic in NYC. Frequent updating of prognostic models is likely to be required for transportability over time and space during a dynamic pandemic. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12916-022-02651-3.
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spelling pubmed-96864622022-11-26 Prognostic models for COVID-19 needed updating to warrant transportability over time and space van Klaveren, David Zanos, Theodoros P. Nelson, Jason Levy, Todd J. Park, Jinny G. Retel Helmrich, Isabel R. A. Rietjens, Judith A. C. Basile, Melissa J. Hajizadeh, Negin Lingsma, Hester F. Kent, David M. BMC Med Research Article BACKGROUND: Supporting decisions for patients who present to the emergency department (ED) with COVID-19 requires accurate prognostication. We aimed to evaluate prognostic models for predicting outcomes in hospitalized patients with COVID-19, in different locations and across time. METHODS: We included patients who presented to the ED with suspected COVID-19 and were admitted to 12 hospitals in the New York City (NYC) area and 4 large Dutch hospitals. We used second-wave patients who presented between September and December 2020 (2137 and 3252 in NYC and the Netherlands, respectively) to evaluate models that were developed on first-wave patients who presented between March and August 2020 (12,163 and 5831). We evaluated two prognostic models for in-hospital death: The Northwell COVID-19 Survival (NOCOS) model was developed on NYC data and the COVID Outcome Prediction in the Emergency Department (COPE) model was developed on Dutch data. These models were validated on subsequent second-wave data at the same site (temporal validation) and at the other site (geographic validation). We assessed model performance by the Area Under the receiver operating characteristic Curve (AUC), by the E-statistic, and by net benefit. RESULTS: Twenty-eight-day mortality was considerably higher in the NYC first-wave data (21.0%), compared to the second-wave (10.1%) and the Dutch data (first wave 10.8%; second wave 10.0%). COPE discriminated well at temporal validation (AUC 0.82), with excellent calibration (E-statistic 0.8%). At geographic validation, discrimination was satisfactory (AUC 0.78), but with moderate over-prediction of mortality risk, particularly in higher-risk patients (E-statistic 2.9%). While discrimination was adequate when NOCOS was tested on second-wave NYC data (AUC 0.77), NOCOS systematically overestimated the mortality risk (E-statistic 5.1%). Discrimination in the Dutch data was good (AUC 0.81), but with over-prediction of risk, particularly in lower-risk patients (E-statistic 4.0%). Recalibration of COPE and NOCOS led to limited net benefit improvement in Dutch data, but to substantial net benefit improvement in NYC data. CONCLUSIONS: NOCOS performed moderately worse than COPE, probably reflecting unique aspects of the early pandemic in NYC. Frequent updating of prognostic models is likely to be required for transportability over time and space during a dynamic pandemic. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12916-022-02651-3. BioMed Central 2022-11-23 /pmc/articles/PMC9686462/ /pubmed/36424619 http://dx.doi.org/10.1186/s12916-022-02651-3 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
van Klaveren, David
Zanos, Theodoros P.
Nelson, Jason
Levy, Todd J.
Park, Jinny G.
Retel Helmrich, Isabel R. A.
Rietjens, Judith A. C.
Basile, Melissa J.
Hajizadeh, Negin
Lingsma, Hester F.
Kent, David M.
Prognostic models for COVID-19 needed updating to warrant transportability over time and space
title Prognostic models for COVID-19 needed updating to warrant transportability over time and space
title_full Prognostic models for COVID-19 needed updating to warrant transportability over time and space
title_fullStr Prognostic models for COVID-19 needed updating to warrant transportability over time and space
title_full_unstemmed Prognostic models for COVID-19 needed updating to warrant transportability over time and space
title_short Prognostic models for COVID-19 needed updating to warrant transportability over time and space
title_sort prognostic models for covid-19 needed updating to warrant transportability over time and space
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9686462/
https://www.ncbi.nlm.nih.gov/pubmed/36424619
http://dx.doi.org/10.1186/s12916-022-02651-3
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