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Open Source Repository and Online Calculator of Prediction Models for Diagnosis and Prognosis in Oncology

(1) Background: The main aim was to develop a prototype application that would serve as an open-source repository for a curated subset of predictive and prognostic models regarding oncology, and provide a user-friendly interface for the included models to allow online calculation. The focus of the a...

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Autores principales: Halilaj, Iva, Oberije, Cary, Chatterjee, Avishek, van Wijk, Yvonka, Rad, Nastaran Mohammadian, Galganebanduge, Prabash, Lavrova, Elizaveta, Primakov, Sergey, Widaatalla, Yousif, Wind, Anke, Lambin, Philippe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9687260/
https://www.ncbi.nlm.nih.gov/pubmed/36359199
http://dx.doi.org/10.3390/biomedicines10112679
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author Halilaj, Iva
Oberije, Cary
Chatterjee, Avishek
van Wijk, Yvonka
Rad, Nastaran Mohammadian
Galganebanduge, Prabash
Lavrova, Elizaveta
Primakov, Sergey
Widaatalla, Yousif
Wind, Anke
Lambin, Philippe
author_facet Halilaj, Iva
Oberije, Cary
Chatterjee, Avishek
van Wijk, Yvonka
Rad, Nastaran Mohammadian
Galganebanduge, Prabash
Lavrova, Elizaveta
Primakov, Sergey
Widaatalla, Yousif
Wind, Anke
Lambin, Philippe
author_sort Halilaj, Iva
collection PubMed
description (1) Background: The main aim was to develop a prototype application that would serve as an open-source repository for a curated subset of predictive and prognostic models regarding oncology, and provide a user-friendly interface for the included models to allow online calculation. The focus of the application is on providing physicians and health professionals with patient-specific information regarding treatment plans, survival rates, and side effects for different expected treatments. (2) Methods: The primarily used models were the ones developed by our research group in the past. This selection was completed by a number of models, addressing the same cancer types but focusing on other outcomes that were selected based on a literature search in PubMed and Medline databases. All selected models were publicly available and had been validated TRIPOD (Transparent Reporting of studies on prediction models for Individual Prognosis Or Diagnosis) type 3 or 2b. (3) Results: The open source repository currently incorporates 18 models from different research groups, evaluated on datasets from different countries. Model types included logistic regression, Cox regression, and recursive partition analysis (decision trees). (4) Conclusions: An application was developed to enable physicians to complement their clinical judgment with user-friendly patient-specific predictions using models that have received internal/external validation. Additionally, this platform enables researchers to display their work, enhancing the use and exposure of their models.
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spelling pubmed-96872602022-11-25 Open Source Repository and Online Calculator of Prediction Models for Diagnosis and Prognosis in Oncology Halilaj, Iva Oberije, Cary Chatterjee, Avishek van Wijk, Yvonka Rad, Nastaran Mohammadian Galganebanduge, Prabash Lavrova, Elizaveta Primakov, Sergey Widaatalla, Yousif Wind, Anke Lambin, Philippe Biomedicines Technical Note (1) Background: The main aim was to develop a prototype application that would serve as an open-source repository for a curated subset of predictive and prognostic models regarding oncology, and provide a user-friendly interface for the included models to allow online calculation. The focus of the application is on providing physicians and health professionals with patient-specific information regarding treatment plans, survival rates, and side effects for different expected treatments. (2) Methods: The primarily used models were the ones developed by our research group in the past. This selection was completed by a number of models, addressing the same cancer types but focusing on other outcomes that were selected based on a literature search in PubMed and Medline databases. All selected models were publicly available and had been validated TRIPOD (Transparent Reporting of studies on prediction models for Individual Prognosis Or Diagnosis) type 3 or 2b. (3) Results: The open source repository currently incorporates 18 models from different research groups, evaluated on datasets from different countries. Model types included logistic regression, Cox regression, and recursive partition analysis (decision trees). (4) Conclusions: An application was developed to enable physicians to complement their clinical judgment with user-friendly patient-specific predictions using models that have received internal/external validation. Additionally, this platform enables researchers to display their work, enhancing the use and exposure of their models. MDPI 2022-10-23 /pmc/articles/PMC9687260/ /pubmed/36359199 http://dx.doi.org/10.3390/biomedicines10112679 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Technical Note
Halilaj, Iva
Oberije, Cary
Chatterjee, Avishek
van Wijk, Yvonka
Rad, Nastaran Mohammadian
Galganebanduge, Prabash
Lavrova, Elizaveta
Primakov, Sergey
Widaatalla, Yousif
Wind, Anke
Lambin, Philippe
Open Source Repository and Online Calculator of Prediction Models for Diagnosis and Prognosis in Oncology
title Open Source Repository and Online Calculator of Prediction Models for Diagnosis and Prognosis in Oncology
title_full Open Source Repository and Online Calculator of Prediction Models for Diagnosis and Prognosis in Oncology
title_fullStr Open Source Repository and Online Calculator of Prediction Models for Diagnosis and Prognosis in Oncology
title_full_unstemmed Open Source Repository and Online Calculator of Prediction Models for Diagnosis and Prognosis in Oncology
title_short Open Source Repository and Online Calculator of Prediction Models for Diagnosis and Prognosis in Oncology
title_sort open source repository and online calculator of prediction models for diagnosis and prognosis in oncology
topic Technical Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9687260/
https://www.ncbi.nlm.nih.gov/pubmed/36359199
http://dx.doi.org/10.3390/biomedicines10112679
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