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Estimation of Caenorhabditis Elegans Lifespan Stages Using a Dual-Path Network Combining Biomarkers and Physiological Changes

Assessing individual aging has always been an important topic in aging research. Caenorhabditis elegans (C. elegans) has a short lifespan and is a popular model organism widely utilized in aging research. Studying the differences in C. elegans life stages is of great significance for human health an...

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Autores principales: Song, Yao, Liu, Jun, Yin, Yanhao, Tang, Jinshan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9687340/
https://www.ncbi.nlm.nih.gov/pubmed/36421090
http://dx.doi.org/10.3390/bioengineering9110689
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author Song, Yao
Liu, Jun
Yin, Yanhao
Tang, Jinshan
author_facet Song, Yao
Liu, Jun
Yin, Yanhao
Tang, Jinshan
author_sort Song, Yao
collection PubMed
description Assessing individual aging has always been an important topic in aging research. Caenorhabditis elegans (C. elegans) has a short lifespan and is a popular model organism widely utilized in aging research. Studying the differences in C. elegans life stages is of great significance for human health and aging. In order to study the differences in C. elegans lifespan stages, the classification of lifespan stages is the first task to be performed. In the past, biomarkers and physiological changes captured with imaging were commonly used to assess aging in isogenic C. elegans individuals. However, all of the current research has focused only on physiological changes or biomarkers for the assessment of aging, which affects the accuracy of assessment. In this paper, we combine two types of features for the assessment of lifespan stages to improve assessment accuracy. To fuse the two types of features, an improved high-efficiency network (Att-EfficientNet) is proposed. In the new EfficientNet, attention mechanisms are introduced so that accuracy can be further improved. In addition, in contrast to previous research, which divided the lifespan into three stages, we divide the lifespan into six stages. We compared the classification method with other CNN-based methods as well as other classic machine learning methods. The results indicate that the classification method has a higher accuracy rate (72%) than other CNN-based methods and some machine learning methods.
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spelling pubmed-96873402022-11-25 Estimation of Caenorhabditis Elegans Lifespan Stages Using a Dual-Path Network Combining Biomarkers and Physiological Changes Song, Yao Liu, Jun Yin, Yanhao Tang, Jinshan Bioengineering (Basel) Article Assessing individual aging has always been an important topic in aging research. Caenorhabditis elegans (C. elegans) has a short lifespan and is a popular model organism widely utilized in aging research. Studying the differences in C. elegans life stages is of great significance for human health and aging. In order to study the differences in C. elegans lifespan stages, the classification of lifespan stages is the first task to be performed. In the past, biomarkers and physiological changes captured with imaging were commonly used to assess aging in isogenic C. elegans individuals. However, all of the current research has focused only on physiological changes or biomarkers for the assessment of aging, which affects the accuracy of assessment. In this paper, we combine two types of features for the assessment of lifespan stages to improve assessment accuracy. To fuse the two types of features, an improved high-efficiency network (Att-EfficientNet) is proposed. In the new EfficientNet, attention mechanisms are introduced so that accuracy can be further improved. In addition, in contrast to previous research, which divided the lifespan into three stages, we divide the lifespan into six stages. We compared the classification method with other CNN-based methods as well as other classic machine learning methods. The results indicate that the classification method has a higher accuracy rate (72%) than other CNN-based methods and some machine learning methods. MDPI 2022-11-14 /pmc/articles/PMC9687340/ /pubmed/36421090 http://dx.doi.org/10.3390/bioengineering9110689 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Song, Yao
Liu, Jun
Yin, Yanhao
Tang, Jinshan
Estimation of Caenorhabditis Elegans Lifespan Stages Using a Dual-Path Network Combining Biomarkers and Physiological Changes
title Estimation of Caenorhabditis Elegans Lifespan Stages Using a Dual-Path Network Combining Biomarkers and Physiological Changes
title_full Estimation of Caenorhabditis Elegans Lifespan Stages Using a Dual-Path Network Combining Biomarkers and Physiological Changes
title_fullStr Estimation of Caenorhabditis Elegans Lifespan Stages Using a Dual-Path Network Combining Biomarkers and Physiological Changes
title_full_unstemmed Estimation of Caenorhabditis Elegans Lifespan Stages Using a Dual-Path Network Combining Biomarkers and Physiological Changes
title_short Estimation of Caenorhabditis Elegans Lifespan Stages Using a Dual-Path Network Combining Biomarkers and Physiological Changes
title_sort estimation of caenorhabditis elegans lifespan stages using a dual-path network combining biomarkers and physiological changes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9687340/
https://www.ncbi.nlm.nih.gov/pubmed/36421090
http://dx.doi.org/10.3390/bioengineering9110689
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