Cargando…

A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability

Herbal formulae (HFs) are representative interventions in Korean medicine (KM) for the prevention and treatment of various diseases. Here, we proposed a machine learning-based approach for HF recommendation with enhanced interpretability and applicability. A dataset consisting of clinical symptoms,...

Descripción completa

Detalles Bibliográficos
Autores principales: Lee, Won-Yung, Lee, Youngseop, Lee, Siwoo, Kim, Young Woo, Kim, Ji-Hwan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9687459/
https://www.ncbi.nlm.nih.gov/pubmed/36358954
http://dx.doi.org/10.3390/biom12111604
_version_ 1784836010506452992
author Lee, Won-Yung
Lee, Youngseop
Lee, Siwoo
Kim, Young Woo
Kim, Ji-Hwan
author_facet Lee, Won-Yung
Lee, Youngseop
Lee, Siwoo
Kim, Young Woo
Kim, Ji-Hwan
author_sort Lee, Won-Yung
collection PubMed
description Herbal formulae (HFs) are representative interventions in Korean medicine (KM) for the prevention and treatment of various diseases. Here, we proposed a machine learning-based approach for HF recommendation with enhanced interpretability and applicability. A dataset consisting of clinical symptoms, Sasang constitution (SC) types, and prescribed HFs was derived from a multicenter study. Case studies published over 10 years were collected and curated by experts. Various classifiers, oversampling methods, and data imputation techniques were comprehensively considered. The local interpretable model-agnostic explanation (LIME) technique was applied to identify the clinical symptoms that led to the recommendation of specific HFs. We found that the cascaded deep forest (CDF) model with data imputation and oversampling yielded the best performance on the training set and holdout test set. Our model also achieved top-1 and top-3 accuracies of 0.35 and 0.89, respectively, on case study datasets in which clinical symptoms were only partially recorded. We performed an expert evaluation on the reliability of interpretation results using case studies and achieved a score close to normal. Taken together, our model will contribute to the modernization of KM and the identification of an HF selection process through the development of a practically useful HF recommendation model.
format Online
Article
Text
id pubmed-9687459
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-96874592022-11-25 A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability Lee, Won-Yung Lee, Youngseop Lee, Siwoo Kim, Young Woo Kim, Ji-Hwan Biomolecules Article Herbal formulae (HFs) are representative interventions in Korean medicine (KM) for the prevention and treatment of various diseases. Here, we proposed a machine learning-based approach for HF recommendation with enhanced interpretability and applicability. A dataset consisting of clinical symptoms, Sasang constitution (SC) types, and prescribed HFs was derived from a multicenter study. Case studies published over 10 years were collected and curated by experts. Various classifiers, oversampling methods, and data imputation techniques were comprehensively considered. The local interpretable model-agnostic explanation (LIME) technique was applied to identify the clinical symptoms that led to the recommendation of specific HFs. We found that the cascaded deep forest (CDF) model with data imputation and oversampling yielded the best performance on the training set and holdout test set. Our model also achieved top-1 and top-3 accuracies of 0.35 and 0.89, respectively, on case study datasets in which clinical symptoms were only partially recorded. We performed an expert evaluation on the reliability of interpretation results using case studies and achieved a score close to normal. Taken together, our model will contribute to the modernization of KM and the identification of an HF selection process through the development of a practically useful HF recommendation model. MDPI 2022-10-31 /pmc/articles/PMC9687459/ /pubmed/36358954 http://dx.doi.org/10.3390/biom12111604 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Lee, Won-Yung
Lee, Youngseop
Lee, Siwoo
Kim, Young Woo
Kim, Ji-Hwan
A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability
title A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability
title_full A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability
title_fullStr A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability
title_full_unstemmed A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability
title_short A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability
title_sort machine learning approach for recommending herbal formulae with enhanced interpretability and applicability
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9687459/
https://www.ncbi.nlm.nih.gov/pubmed/36358954
http://dx.doi.org/10.3390/biom12111604
work_keys_str_mv AT leewonyung amachinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability
AT leeyoungseop amachinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability
AT leesiwoo amachinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability
AT kimyoungwoo amachinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability
AT kimjihwan amachinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability
AT leewonyung machinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability
AT leeyoungseop machinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability
AT leesiwoo machinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability
AT kimyoungwoo machinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability
AT kimjihwan machinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability