Cargando…
A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability
Herbal formulae (HFs) are representative interventions in Korean medicine (KM) for the prevention and treatment of various diseases. Here, we proposed a machine learning-based approach for HF recommendation with enhanced interpretability and applicability. A dataset consisting of clinical symptoms,...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9687459/ https://www.ncbi.nlm.nih.gov/pubmed/36358954 http://dx.doi.org/10.3390/biom12111604 |
_version_ | 1784836010506452992 |
---|---|
author | Lee, Won-Yung Lee, Youngseop Lee, Siwoo Kim, Young Woo Kim, Ji-Hwan |
author_facet | Lee, Won-Yung Lee, Youngseop Lee, Siwoo Kim, Young Woo Kim, Ji-Hwan |
author_sort | Lee, Won-Yung |
collection | PubMed |
description | Herbal formulae (HFs) are representative interventions in Korean medicine (KM) for the prevention and treatment of various diseases. Here, we proposed a machine learning-based approach for HF recommendation with enhanced interpretability and applicability. A dataset consisting of clinical symptoms, Sasang constitution (SC) types, and prescribed HFs was derived from a multicenter study. Case studies published over 10 years were collected and curated by experts. Various classifiers, oversampling methods, and data imputation techniques were comprehensively considered. The local interpretable model-agnostic explanation (LIME) technique was applied to identify the clinical symptoms that led to the recommendation of specific HFs. We found that the cascaded deep forest (CDF) model with data imputation and oversampling yielded the best performance on the training set and holdout test set. Our model also achieved top-1 and top-3 accuracies of 0.35 and 0.89, respectively, on case study datasets in which clinical symptoms were only partially recorded. We performed an expert evaluation on the reliability of interpretation results using case studies and achieved a score close to normal. Taken together, our model will contribute to the modernization of KM and the identification of an HF selection process through the development of a practically useful HF recommendation model. |
format | Online Article Text |
id | pubmed-9687459 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96874592022-11-25 A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability Lee, Won-Yung Lee, Youngseop Lee, Siwoo Kim, Young Woo Kim, Ji-Hwan Biomolecules Article Herbal formulae (HFs) are representative interventions in Korean medicine (KM) for the prevention and treatment of various diseases. Here, we proposed a machine learning-based approach for HF recommendation with enhanced interpretability and applicability. A dataset consisting of clinical symptoms, Sasang constitution (SC) types, and prescribed HFs was derived from a multicenter study. Case studies published over 10 years were collected and curated by experts. Various classifiers, oversampling methods, and data imputation techniques were comprehensively considered. The local interpretable model-agnostic explanation (LIME) technique was applied to identify the clinical symptoms that led to the recommendation of specific HFs. We found that the cascaded deep forest (CDF) model with data imputation and oversampling yielded the best performance on the training set and holdout test set. Our model also achieved top-1 and top-3 accuracies of 0.35 and 0.89, respectively, on case study datasets in which clinical symptoms were only partially recorded. We performed an expert evaluation on the reliability of interpretation results using case studies and achieved a score close to normal. Taken together, our model will contribute to the modernization of KM and the identification of an HF selection process through the development of a practically useful HF recommendation model. MDPI 2022-10-31 /pmc/articles/PMC9687459/ /pubmed/36358954 http://dx.doi.org/10.3390/biom12111604 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Lee, Won-Yung Lee, Youngseop Lee, Siwoo Kim, Young Woo Kim, Ji-Hwan A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability |
title | A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability |
title_full | A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability |
title_fullStr | A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability |
title_full_unstemmed | A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability |
title_short | A Machine Learning Approach for Recommending Herbal Formulae with Enhanced Interpretability and Applicability |
title_sort | machine learning approach for recommending herbal formulae with enhanced interpretability and applicability |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9687459/ https://www.ncbi.nlm.nih.gov/pubmed/36358954 http://dx.doi.org/10.3390/biom12111604 |
work_keys_str_mv | AT leewonyung amachinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability AT leeyoungseop amachinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability AT leesiwoo amachinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability AT kimyoungwoo amachinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability AT kimjihwan amachinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability AT leewonyung machinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability AT leeyoungseop machinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability AT leesiwoo machinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability AT kimyoungwoo machinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability AT kimjihwan machinelearningapproachforrecommendingherbalformulaewithenhancedinterpretabilityandapplicability |