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Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules
The abundance of applications of alginates in aqueous surroundings created by their interactions with water is a fascinating area of research. In this paper, computational analysis was used to evaluate the conformation, hydrogen bond network, and stabilities for putative intermolecular interactions...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9689446/ https://www.ncbi.nlm.nih.gov/pubmed/36354611 http://dx.doi.org/10.3390/gels8110703 |
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author | Anugrah, Daru Seto Bagus Darmalim, Laura Virdy Polanen, Muhammad Rifky Irwanto Putro, Permono Adi Sasongko, Nurwarrohman Andre Siahaan, Parsaoran Ramadhan, Zeno Rizqi |
author_facet | Anugrah, Daru Seto Bagus Darmalim, Laura Virdy Polanen, Muhammad Rifky Irwanto Putro, Permono Adi Sasongko, Nurwarrohman Andre Siahaan, Parsaoran Ramadhan, Zeno Rizqi |
author_sort | Anugrah, Daru Seto Bagus |
collection | PubMed |
description | The abundance of applications of alginates in aqueous surroundings created by their interactions with water is a fascinating area of research. In this paper, computational analysis was used to evaluate the conformation, hydrogen bond network, and stabilities for putative intermolecular interactions between alginate dimers and water molecules. Two structural forms of alginate (alginic acid, alg, and sodium alginate, SA) were evaluated for their interactions with water molecules. The density functional theory (DFT-D3) method at the B3LYP functional and the basis set 6-31++G** was chosen for calculating the data. Hydrogen bonds were formed in the Alg-(H(2)O)(n) complexes, while the SA-(H(2)O)(n) complexes showed an increase in Van der Walls interactions and hydrogen bonds. Moreover, in the SA-(H(2)O)(n) complexes, metal-nonmetal bonds existed between the sodium atom in SA and the oxygen atom in water (Na…O). All computational data in this study demonstrated that alginate dimers and water molecules had moderate to high levels of interaction, giving more stability to their complex structure. |
format | Online Article Text |
id | pubmed-9689446 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96894462022-11-25 Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules Anugrah, Daru Seto Bagus Darmalim, Laura Virdy Polanen, Muhammad Rifky Irwanto Putro, Permono Adi Sasongko, Nurwarrohman Andre Siahaan, Parsaoran Ramadhan, Zeno Rizqi Gels Article The abundance of applications of alginates in aqueous surroundings created by their interactions with water is a fascinating area of research. In this paper, computational analysis was used to evaluate the conformation, hydrogen bond network, and stabilities for putative intermolecular interactions between alginate dimers and water molecules. Two structural forms of alginate (alginic acid, alg, and sodium alginate, SA) were evaluated for their interactions with water molecules. The density functional theory (DFT-D3) method at the B3LYP functional and the basis set 6-31++G** was chosen for calculating the data. Hydrogen bonds were formed in the Alg-(H(2)O)(n) complexes, while the SA-(H(2)O)(n) complexes showed an increase in Van der Walls interactions and hydrogen bonds. Moreover, in the SA-(H(2)O)(n) complexes, metal-nonmetal bonds existed between the sodium atom in SA and the oxygen atom in water (Na…O). All computational data in this study demonstrated that alginate dimers and water molecules had moderate to high levels of interaction, giving more stability to their complex structure. MDPI 2022-10-31 /pmc/articles/PMC9689446/ /pubmed/36354611 http://dx.doi.org/10.3390/gels8110703 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Anugrah, Daru Seto Bagus Darmalim, Laura Virdy Polanen, Muhammad Rifky Irwanto Putro, Permono Adi Sasongko, Nurwarrohman Andre Siahaan, Parsaoran Ramadhan, Zeno Rizqi Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules |
title | Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules |
title_full | Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules |
title_fullStr | Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules |
title_full_unstemmed | Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules |
title_short | Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules |
title_sort | quantum chemical calculation for intermolecular interactions of alginate dimer-water molecules |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9689446/ https://www.ncbi.nlm.nih.gov/pubmed/36354611 http://dx.doi.org/10.3390/gels8110703 |
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