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Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules

The abundance of applications of alginates in aqueous surroundings created by their interactions with water is a fascinating area of research. In this paper, computational analysis was used to evaluate the conformation, hydrogen bond network, and stabilities for putative intermolecular interactions...

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Autores principales: Anugrah, Daru Seto Bagus, Darmalim, Laura Virdy, Polanen, Muhammad Rifky Irwanto, Putro, Permono Adi, Sasongko, Nurwarrohman Andre, Siahaan, Parsaoran, Ramadhan, Zeno Rizqi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9689446/
https://www.ncbi.nlm.nih.gov/pubmed/36354611
http://dx.doi.org/10.3390/gels8110703
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author Anugrah, Daru Seto Bagus
Darmalim, Laura Virdy
Polanen, Muhammad Rifky Irwanto
Putro, Permono Adi
Sasongko, Nurwarrohman Andre
Siahaan, Parsaoran
Ramadhan, Zeno Rizqi
author_facet Anugrah, Daru Seto Bagus
Darmalim, Laura Virdy
Polanen, Muhammad Rifky Irwanto
Putro, Permono Adi
Sasongko, Nurwarrohman Andre
Siahaan, Parsaoran
Ramadhan, Zeno Rizqi
author_sort Anugrah, Daru Seto Bagus
collection PubMed
description The abundance of applications of alginates in aqueous surroundings created by their interactions with water is a fascinating area of research. In this paper, computational analysis was used to evaluate the conformation, hydrogen bond network, and stabilities for putative intermolecular interactions between alginate dimers and water molecules. Two structural forms of alginate (alginic acid, alg, and sodium alginate, SA) were evaluated for their interactions with water molecules. The density functional theory (DFT-D3) method at the B3LYP functional and the basis set 6-31++G** was chosen for calculating the data. Hydrogen bonds were formed in the Alg-(H(2)O)(n) complexes, while the SA-(H(2)O)(n) complexes showed an increase in Van der Walls interactions and hydrogen bonds. Moreover, in the SA-(H(2)O)(n) complexes, metal-nonmetal bonds existed between the sodium atom in SA and the oxygen atom in water (Na…O). All computational data in this study demonstrated that alginate dimers and water molecules had moderate to high levels of interaction, giving more stability to their complex structure.
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spelling pubmed-96894462022-11-25 Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules Anugrah, Daru Seto Bagus Darmalim, Laura Virdy Polanen, Muhammad Rifky Irwanto Putro, Permono Adi Sasongko, Nurwarrohman Andre Siahaan, Parsaoran Ramadhan, Zeno Rizqi Gels Article The abundance of applications of alginates in aqueous surroundings created by their interactions with water is a fascinating area of research. In this paper, computational analysis was used to evaluate the conformation, hydrogen bond network, and stabilities for putative intermolecular interactions between alginate dimers and water molecules. Two structural forms of alginate (alginic acid, alg, and sodium alginate, SA) were evaluated for their interactions with water molecules. The density functional theory (DFT-D3) method at the B3LYP functional and the basis set 6-31++G** was chosen for calculating the data. Hydrogen bonds were formed in the Alg-(H(2)O)(n) complexes, while the SA-(H(2)O)(n) complexes showed an increase in Van der Walls interactions and hydrogen bonds. Moreover, in the SA-(H(2)O)(n) complexes, metal-nonmetal bonds existed between the sodium atom in SA and the oxygen atom in water (Na…O). All computational data in this study demonstrated that alginate dimers and water molecules had moderate to high levels of interaction, giving more stability to their complex structure. MDPI 2022-10-31 /pmc/articles/PMC9689446/ /pubmed/36354611 http://dx.doi.org/10.3390/gels8110703 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Anugrah, Daru Seto Bagus
Darmalim, Laura Virdy
Polanen, Muhammad Rifky Irwanto
Putro, Permono Adi
Sasongko, Nurwarrohman Andre
Siahaan, Parsaoran
Ramadhan, Zeno Rizqi
Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules
title Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules
title_full Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules
title_fullStr Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules
title_full_unstemmed Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules
title_short Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules
title_sort quantum chemical calculation for intermolecular interactions of alginate dimer-water molecules
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9689446/
https://www.ncbi.nlm.nih.gov/pubmed/36354611
http://dx.doi.org/10.3390/gels8110703
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