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Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis

The purpose of this study is to explore the correlation between ferroptosis-related genes and schizophrenia in order to explore the new direction of diagnosis and treatment of schizophrenia. We screened the datasets related to schizophrenia from the Gene Expression Comprehensive Database (GEO) and o...

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Autores principales: Feng, Shunkang, Chen, Jun, Qu, Chunhui, Yang, Lu, Wu, Xiaohui, Wang, Shuo, Yang, Tao, Liu, Hongmei, Fang, Yiru, Sun, Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9690569/
https://www.ncbi.nlm.nih.gov/pubmed/36421842
http://dx.doi.org/10.3390/genes13112168
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author Feng, Shunkang
Chen, Jun
Qu, Chunhui
Yang, Lu
Wu, Xiaohui
Wang, Shuo
Yang, Tao
Liu, Hongmei
Fang, Yiru
Sun, Ping
author_facet Feng, Shunkang
Chen, Jun
Qu, Chunhui
Yang, Lu
Wu, Xiaohui
Wang, Shuo
Yang, Tao
Liu, Hongmei
Fang, Yiru
Sun, Ping
author_sort Feng, Shunkang
collection PubMed
description The purpose of this study is to explore the correlation between ferroptosis-related genes and schizophrenia in order to explore the new direction of diagnosis and treatment of schizophrenia. We screened the datasets related to schizophrenia from the Gene Expression Comprehensive Database (GEO) and obtained ferroptosis-related genes from the FerrDB database. Bioinformatics methods were used to analyze differentially expressed genes (DEGs) and genes associated with ferroptosis-related between schizophrenia patients and healthy controls. On this basis, the hub genes were finally screened by enrichment analysis and PPI interaction analysis. Hub genes associated with ferroptosis were validated using other schizophrenia datasets in the GEO database. Finally, the hub gene-microRNA (miRNA), gene-transcription factor interaction network was constructed, and three ferroptosis-related hub genes (TP53, VEGFA and PTGS2) were screened. The validation results of these three genes in other datasets also support this conclusion. A miRNA: hsa-mir-16-5p was found to be related to the three hub genes, and pPHF8, SAP30 and lKDM5B were identified as common regulators of the three hub genes. Our results indicate that TP53, VEGFA and PTGS2 are significantly associated with schizophrenia, and may be ferroptosis-related markers of the disease.
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spelling pubmed-96905692022-11-25 Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis Feng, Shunkang Chen, Jun Qu, Chunhui Yang, Lu Wu, Xiaohui Wang, Shuo Yang, Tao Liu, Hongmei Fang, Yiru Sun, Ping Genes (Basel) Article The purpose of this study is to explore the correlation between ferroptosis-related genes and schizophrenia in order to explore the new direction of diagnosis and treatment of schizophrenia. We screened the datasets related to schizophrenia from the Gene Expression Comprehensive Database (GEO) and obtained ferroptosis-related genes from the FerrDB database. Bioinformatics methods were used to analyze differentially expressed genes (DEGs) and genes associated with ferroptosis-related between schizophrenia patients and healthy controls. On this basis, the hub genes were finally screened by enrichment analysis and PPI interaction analysis. Hub genes associated with ferroptosis were validated using other schizophrenia datasets in the GEO database. Finally, the hub gene-microRNA (miRNA), gene-transcription factor interaction network was constructed, and three ferroptosis-related hub genes (TP53, VEGFA and PTGS2) were screened. The validation results of these three genes in other datasets also support this conclusion. A miRNA: hsa-mir-16-5p was found to be related to the three hub genes, and pPHF8, SAP30 and lKDM5B were identified as common regulators of the three hub genes. Our results indicate that TP53, VEGFA and PTGS2 are significantly associated with schizophrenia, and may be ferroptosis-related markers of the disease. MDPI 2022-11-20 /pmc/articles/PMC9690569/ /pubmed/36421842 http://dx.doi.org/10.3390/genes13112168 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Feng, Shunkang
Chen, Jun
Qu, Chunhui
Yang, Lu
Wu, Xiaohui
Wang, Shuo
Yang, Tao
Liu, Hongmei
Fang, Yiru
Sun, Ping
Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis
title Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis
title_full Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis
title_fullStr Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis
title_full_unstemmed Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis
title_short Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis
title_sort identification of ferroptosis-related genes in schizophrenia based on bioinformatic analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9690569/
https://www.ncbi.nlm.nih.gov/pubmed/36421842
http://dx.doi.org/10.3390/genes13112168
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