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Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis
The purpose of this study is to explore the correlation between ferroptosis-related genes and schizophrenia in order to explore the new direction of diagnosis and treatment of schizophrenia. We screened the datasets related to schizophrenia from the Gene Expression Comprehensive Database (GEO) and o...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9690569/ https://www.ncbi.nlm.nih.gov/pubmed/36421842 http://dx.doi.org/10.3390/genes13112168 |
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author | Feng, Shunkang Chen, Jun Qu, Chunhui Yang, Lu Wu, Xiaohui Wang, Shuo Yang, Tao Liu, Hongmei Fang, Yiru Sun, Ping |
author_facet | Feng, Shunkang Chen, Jun Qu, Chunhui Yang, Lu Wu, Xiaohui Wang, Shuo Yang, Tao Liu, Hongmei Fang, Yiru Sun, Ping |
author_sort | Feng, Shunkang |
collection | PubMed |
description | The purpose of this study is to explore the correlation between ferroptosis-related genes and schizophrenia in order to explore the new direction of diagnosis and treatment of schizophrenia. We screened the datasets related to schizophrenia from the Gene Expression Comprehensive Database (GEO) and obtained ferroptosis-related genes from the FerrDB database. Bioinformatics methods were used to analyze differentially expressed genes (DEGs) and genes associated with ferroptosis-related between schizophrenia patients and healthy controls. On this basis, the hub genes were finally screened by enrichment analysis and PPI interaction analysis. Hub genes associated with ferroptosis were validated using other schizophrenia datasets in the GEO database. Finally, the hub gene-microRNA (miRNA), gene-transcription factor interaction network was constructed, and three ferroptosis-related hub genes (TP53, VEGFA and PTGS2) were screened. The validation results of these three genes in other datasets also support this conclusion. A miRNA: hsa-mir-16-5p was found to be related to the three hub genes, and pPHF8, SAP30 and lKDM5B were identified as common regulators of the three hub genes. Our results indicate that TP53, VEGFA and PTGS2 are significantly associated with schizophrenia, and may be ferroptosis-related markers of the disease. |
format | Online Article Text |
id | pubmed-9690569 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96905692022-11-25 Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis Feng, Shunkang Chen, Jun Qu, Chunhui Yang, Lu Wu, Xiaohui Wang, Shuo Yang, Tao Liu, Hongmei Fang, Yiru Sun, Ping Genes (Basel) Article The purpose of this study is to explore the correlation between ferroptosis-related genes and schizophrenia in order to explore the new direction of diagnosis and treatment of schizophrenia. We screened the datasets related to schizophrenia from the Gene Expression Comprehensive Database (GEO) and obtained ferroptosis-related genes from the FerrDB database. Bioinformatics methods were used to analyze differentially expressed genes (DEGs) and genes associated with ferroptosis-related between schizophrenia patients and healthy controls. On this basis, the hub genes were finally screened by enrichment analysis and PPI interaction analysis. Hub genes associated with ferroptosis were validated using other schizophrenia datasets in the GEO database. Finally, the hub gene-microRNA (miRNA), gene-transcription factor interaction network was constructed, and three ferroptosis-related hub genes (TP53, VEGFA and PTGS2) were screened. The validation results of these three genes in other datasets also support this conclusion. A miRNA: hsa-mir-16-5p was found to be related to the three hub genes, and pPHF8, SAP30 and lKDM5B were identified as common regulators of the three hub genes. Our results indicate that TP53, VEGFA and PTGS2 are significantly associated with schizophrenia, and may be ferroptosis-related markers of the disease. MDPI 2022-11-20 /pmc/articles/PMC9690569/ /pubmed/36421842 http://dx.doi.org/10.3390/genes13112168 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Feng, Shunkang Chen, Jun Qu, Chunhui Yang, Lu Wu, Xiaohui Wang, Shuo Yang, Tao Liu, Hongmei Fang, Yiru Sun, Ping Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis |
title | Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis |
title_full | Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis |
title_fullStr | Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis |
title_full_unstemmed | Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis |
title_short | Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis |
title_sort | identification of ferroptosis-related genes in schizophrenia based on bioinformatic analysis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9690569/ https://www.ncbi.nlm.nih.gov/pubmed/36421842 http://dx.doi.org/10.3390/genes13112168 |
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