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Complete Mitogenome of Oreolalax omeimontis Reveals Phylogenetic Status and Novel Gene Arrangement of Archaeobatrachia
Species of the genus Oreolalax displayed crucial morphological characteristics of vertebrates transitioning from aquatic to terrestrial habitats; thus, they can be regarded as a representative vertebrate genus for this landing phenomenon. But the present phylogenetic status of Oreolalax omeimontis h...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9691213/ https://www.ncbi.nlm.nih.gov/pubmed/36360325 http://dx.doi.org/10.3390/genes13112089 |
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author | Luo, Hongdi Cui, Lin Han, Fuyao He, Zhi Fan, Xiaolan Zeng, Bo Yang, Mingyao Yang, Deying Ni, Qingyong Li, Yan Yao, Yongfang Xu, Huailiang Yang, Jiandong Wei, Zhimin Li, Tongqing Rao, Dingqi Yan, Taiming Zhang, Mingwang |
author_facet | Luo, Hongdi Cui, Lin Han, Fuyao He, Zhi Fan, Xiaolan Zeng, Bo Yang, Mingyao Yang, Deying Ni, Qingyong Li, Yan Yao, Yongfang Xu, Huailiang Yang, Jiandong Wei, Zhimin Li, Tongqing Rao, Dingqi Yan, Taiming Zhang, Mingwang |
author_sort | Luo, Hongdi |
collection | PubMed |
description | Species of the genus Oreolalax displayed crucial morphological characteristics of vertebrates transitioning from aquatic to terrestrial habitats; thus, they can be regarded as a representative vertebrate genus for this landing phenomenon. But the present phylogenetic status of Oreolalax omeimontis has been controversial with morphological and molecular approaches, and specific gene rearrangements were discovered in all six published Oreolalax mitogenomes, which are rarely observed in Archaeobatrachia. Therefore, this study determined the complete mitogenome of O. omeimontis with the aim of identifying its precise phylogenetic position and novel gene arrangement in Archaeobatrachia. Phylogenetic analysis with Bayesian inference and maximum likelihood indicates O. omeimontis is a sister group to O. lichuanensis, which is consistent with previous phylogenetic analysis based on morphological characteristics, but contrasts with other studies using multiple gene fragments. Moreover, although the duplication of trnM occurred in all seven Oreolalax species, the translocation of trnQ and trnM occurred differently in O. omeimontis to the other six, and this unique rearrangement would happen after the speciation of O. omeimontis. In general, this study sheds new light on the phylogenetic relationships and gene rearrangements of Archaeobatrachia. |
format | Online Article Text |
id | pubmed-9691213 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96912132022-11-25 Complete Mitogenome of Oreolalax omeimontis Reveals Phylogenetic Status and Novel Gene Arrangement of Archaeobatrachia Luo, Hongdi Cui, Lin Han, Fuyao He, Zhi Fan, Xiaolan Zeng, Bo Yang, Mingyao Yang, Deying Ni, Qingyong Li, Yan Yao, Yongfang Xu, Huailiang Yang, Jiandong Wei, Zhimin Li, Tongqing Rao, Dingqi Yan, Taiming Zhang, Mingwang Genes (Basel) Article Species of the genus Oreolalax displayed crucial morphological characteristics of vertebrates transitioning from aquatic to terrestrial habitats; thus, they can be regarded as a representative vertebrate genus for this landing phenomenon. But the present phylogenetic status of Oreolalax omeimontis has been controversial with morphological and molecular approaches, and specific gene rearrangements were discovered in all six published Oreolalax mitogenomes, which are rarely observed in Archaeobatrachia. Therefore, this study determined the complete mitogenome of O. omeimontis with the aim of identifying its precise phylogenetic position and novel gene arrangement in Archaeobatrachia. Phylogenetic analysis with Bayesian inference and maximum likelihood indicates O. omeimontis is a sister group to O. lichuanensis, which is consistent with previous phylogenetic analysis based on morphological characteristics, but contrasts with other studies using multiple gene fragments. Moreover, although the duplication of trnM occurred in all seven Oreolalax species, the translocation of trnQ and trnM occurred differently in O. omeimontis to the other six, and this unique rearrangement would happen after the speciation of O. omeimontis. In general, this study sheds new light on the phylogenetic relationships and gene rearrangements of Archaeobatrachia. MDPI 2022-11-10 /pmc/articles/PMC9691213/ /pubmed/36360325 http://dx.doi.org/10.3390/genes13112089 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Luo, Hongdi Cui, Lin Han, Fuyao He, Zhi Fan, Xiaolan Zeng, Bo Yang, Mingyao Yang, Deying Ni, Qingyong Li, Yan Yao, Yongfang Xu, Huailiang Yang, Jiandong Wei, Zhimin Li, Tongqing Rao, Dingqi Yan, Taiming Zhang, Mingwang Complete Mitogenome of Oreolalax omeimontis Reveals Phylogenetic Status and Novel Gene Arrangement of Archaeobatrachia |
title | Complete Mitogenome of Oreolalax omeimontis Reveals Phylogenetic Status and Novel Gene Arrangement of Archaeobatrachia |
title_full | Complete Mitogenome of Oreolalax omeimontis Reveals Phylogenetic Status and Novel Gene Arrangement of Archaeobatrachia |
title_fullStr | Complete Mitogenome of Oreolalax omeimontis Reveals Phylogenetic Status and Novel Gene Arrangement of Archaeobatrachia |
title_full_unstemmed | Complete Mitogenome of Oreolalax omeimontis Reveals Phylogenetic Status and Novel Gene Arrangement of Archaeobatrachia |
title_short | Complete Mitogenome of Oreolalax omeimontis Reveals Phylogenetic Status and Novel Gene Arrangement of Archaeobatrachia |
title_sort | complete mitogenome of oreolalax omeimontis reveals phylogenetic status and novel gene arrangement of archaeobatrachia |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9691213/ https://www.ncbi.nlm.nih.gov/pubmed/36360325 http://dx.doi.org/10.3390/genes13112089 |
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