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Identification of GLS as a cuproptosis-related diagnosis gene in acute myocardial infarction
Acute myocardial infarction (AMI) has the characteristics of sudden onset, rapid progression, poor prognosis, and so on. Therefore, it is urgent to identify diagnostic and prognostic biomarkers for it. Cuproptosis is a new form of mitochondrial respiratory-dependent cell death. However, studies are...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9691691/ https://www.ncbi.nlm.nih.gov/pubmed/36440046 http://dx.doi.org/10.3389/fcvm.2022.1016081 |
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author | Liu, Zheng Wang, Lei Xing, Qichang Liu, Xiang Hu, Yixiang Li, Wencan Yan, Qingzi Liu, Renzhu Huang, Nan |
author_facet | Liu, Zheng Wang, Lei Xing, Qichang Liu, Xiang Hu, Yixiang Li, Wencan Yan, Qingzi Liu, Renzhu Huang, Nan |
author_sort | Liu, Zheng |
collection | PubMed |
description | Acute myocardial infarction (AMI) has the characteristics of sudden onset, rapid progression, poor prognosis, and so on. Therefore, it is urgent to identify diagnostic and prognostic biomarkers for it. Cuproptosis is a new form of mitochondrial respiratory-dependent cell death. However, studies are limited on the clinical significance of cuproptosis-related genes (CRGs) in AMI. In this study, we systematically assessed the genetic alterations of CRGs in AMI by bioinformatics approach. The results showed that six CRGs (LIAS, LIPT1, DLAT, PDHB, MTF1, and GLS) were markedly differentially expressed between stable coronary heart disease (stable_CAD) and AMI. Correlation analysis indicated that CRGs were closely correlated with N6-methyladenosine (m6A)-related genes through R language “corrplot” package, especially GLS was positively correlated with FMR1 and MTF1 was negatively correlated with HNRNPA2B1. Immune landscape analysis results revealed that CRGs were closely related to various immune cells, especially GLS was positively correlated with T cells CD4 memory resting and negatively correlated with monocytes. Kaplan–Meier analysis demonstrated that the group with high DLAT expression had a better prognosis. The area under curve (AUC) certified that GLS had good diagnostic value, in the training set (AUC = 0.87) and verification set (ACU = 0.99). Gene set enrichment analysis (GSEA) suggested that GLS was associated with immune- and hypoxia-related pathways. In addition, Gene Ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, competing endogenous RNA (ceRNA) analysis, transcription factor (TF), and compound prediction were performed to reveal the regulatory mechanism of CRGs in AMI. Overall, our study can provide additional information for understanding the role of CRGs in AMI, which may provide new insights into the identification of therapeutic targets for AMI. |
format | Online Article Text |
id | pubmed-9691691 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96916912022-11-26 Identification of GLS as a cuproptosis-related diagnosis gene in acute myocardial infarction Liu, Zheng Wang, Lei Xing, Qichang Liu, Xiang Hu, Yixiang Li, Wencan Yan, Qingzi Liu, Renzhu Huang, Nan Front Cardiovasc Med Cardiovascular Medicine Acute myocardial infarction (AMI) has the characteristics of sudden onset, rapid progression, poor prognosis, and so on. Therefore, it is urgent to identify diagnostic and prognostic biomarkers for it. Cuproptosis is a new form of mitochondrial respiratory-dependent cell death. However, studies are limited on the clinical significance of cuproptosis-related genes (CRGs) in AMI. In this study, we systematically assessed the genetic alterations of CRGs in AMI by bioinformatics approach. The results showed that six CRGs (LIAS, LIPT1, DLAT, PDHB, MTF1, and GLS) were markedly differentially expressed between stable coronary heart disease (stable_CAD) and AMI. Correlation analysis indicated that CRGs were closely correlated with N6-methyladenosine (m6A)-related genes through R language “corrplot” package, especially GLS was positively correlated with FMR1 and MTF1 was negatively correlated with HNRNPA2B1. Immune landscape analysis results revealed that CRGs were closely related to various immune cells, especially GLS was positively correlated with T cells CD4 memory resting and negatively correlated with monocytes. Kaplan–Meier analysis demonstrated that the group with high DLAT expression had a better prognosis. The area under curve (AUC) certified that GLS had good diagnostic value, in the training set (AUC = 0.87) and verification set (ACU = 0.99). Gene set enrichment analysis (GSEA) suggested that GLS was associated with immune- and hypoxia-related pathways. In addition, Gene Ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, competing endogenous RNA (ceRNA) analysis, transcription factor (TF), and compound prediction were performed to reveal the regulatory mechanism of CRGs in AMI. Overall, our study can provide additional information for understanding the role of CRGs in AMI, which may provide new insights into the identification of therapeutic targets for AMI. Frontiers Media S.A. 2022-11-11 /pmc/articles/PMC9691691/ /pubmed/36440046 http://dx.doi.org/10.3389/fcvm.2022.1016081 Text en Copyright © 2022 Liu, Wang, Xing, Liu, Hu, Li, Yan, Liu and Huang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cardiovascular Medicine Liu, Zheng Wang, Lei Xing, Qichang Liu, Xiang Hu, Yixiang Li, Wencan Yan, Qingzi Liu, Renzhu Huang, Nan Identification of GLS as a cuproptosis-related diagnosis gene in acute myocardial infarction |
title | Identification of GLS as a cuproptosis-related diagnosis gene in acute myocardial infarction |
title_full | Identification of GLS as a cuproptosis-related diagnosis gene in acute myocardial infarction |
title_fullStr | Identification of GLS as a cuproptosis-related diagnosis gene in acute myocardial infarction |
title_full_unstemmed | Identification of GLS as a cuproptosis-related diagnosis gene in acute myocardial infarction |
title_short | Identification of GLS as a cuproptosis-related diagnosis gene in acute myocardial infarction |
title_sort | identification of gls as a cuproptosis-related diagnosis gene in acute myocardial infarction |
topic | Cardiovascular Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9691691/ https://www.ncbi.nlm.nih.gov/pubmed/36440046 http://dx.doi.org/10.3389/fcvm.2022.1016081 |
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