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Role of ferroptosis-associated genes in ankylosing spondylitis and immune cell infiltration

Ankylosing spondylitis (AS) is a chronic progressive autoimmune disease with insidious onset, high rates of disability among patients, unknown pathogenesis, and no effective treatment. Ferroptosis is a novel type of regulated cell death that is associated with various cancers and diseases. However,...

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Autores principales: Li, Qiaochu, Chen, Zhiyu, Yang, Chaohua, Wang, Linbang, Ma, Jingjin, He, Tao, Li, Huanhuan, Quan, Zhengxue
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9691995/
https://www.ncbi.nlm.nih.gov/pubmed/36437923
http://dx.doi.org/10.3389/fgene.2022.948290
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author Li, Qiaochu
Chen, Zhiyu
Yang, Chaohua
Wang, Linbang
Ma, Jingjin
He, Tao
Li, Huanhuan
Quan, Zhengxue
author_facet Li, Qiaochu
Chen, Zhiyu
Yang, Chaohua
Wang, Linbang
Ma, Jingjin
He, Tao
Li, Huanhuan
Quan, Zhengxue
author_sort Li, Qiaochu
collection PubMed
description Ankylosing spondylitis (AS) is a chronic progressive autoimmune disease with insidious onset, high rates of disability among patients, unknown pathogenesis, and no effective treatment. Ferroptosis is a novel type of regulated cell death that is associated with various cancers and diseases. However, its relation to AS is not clear. In the present study, we identified two potential therapeutic targets for AS based on genes associated with ferroptosis and explored their association with immune cells and immune cell infiltration (ICI). We studied gene expression profiles of two cohorts of patients with AS (GSE25101 and GSE41038) derived from the gene expression omnibus database, and ferroptosis-associated genes (FRGs) were obtained from the FerrDb database. LASSO regression analysis was performed to build predictive models for AS based on FRGs, and the ferroptosis level in each sample was assessed via single-sample gene set enrichment analysis. Weighted gene co-expression network and protein-protein interaction network analyses were performed for screening; two key genes, DDIT3 and HSPB1, were identified in patients with AS. The relationship between key genes and ICI levels was assessed using the CIBERSORT algorithm, followed by gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses. Finally, DDIT3 and HSPB1 were identified as diagnostic markers and potential therapeutic targets for AS. DDIT3 was highly positively correlated with the infiltration levels of various immune cells, while HSPB1 was negatively correlated with the infiltration levels of several different types of immune cells. In conclusion, DDIT3 and HSPB1 may induce ferroptosis in the cells of patients with AS via changes in the inflammatory response in the immune microenvironment, and these genes could serve as molecular targets for AS therapy.
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spelling pubmed-96919952022-11-26 Role of ferroptosis-associated genes in ankylosing spondylitis and immune cell infiltration Li, Qiaochu Chen, Zhiyu Yang, Chaohua Wang, Linbang Ma, Jingjin He, Tao Li, Huanhuan Quan, Zhengxue Front Genet Genetics Ankylosing spondylitis (AS) is a chronic progressive autoimmune disease with insidious onset, high rates of disability among patients, unknown pathogenesis, and no effective treatment. Ferroptosis is a novel type of regulated cell death that is associated with various cancers and diseases. However, its relation to AS is not clear. In the present study, we identified two potential therapeutic targets for AS based on genes associated with ferroptosis and explored their association with immune cells and immune cell infiltration (ICI). We studied gene expression profiles of two cohorts of patients with AS (GSE25101 and GSE41038) derived from the gene expression omnibus database, and ferroptosis-associated genes (FRGs) were obtained from the FerrDb database. LASSO regression analysis was performed to build predictive models for AS based on FRGs, and the ferroptosis level in each sample was assessed via single-sample gene set enrichment analysis. Weighted gene co-expression network and protein-protein interaction network analyses were performed for screening; two key genes, DDIT3 and HSPB1, were identified in patients with AS. The relationship between key genes and ICI levels was assessed using the CIBERSORT algorithm, followed by gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses. Finally, DDIT3 and HSPB1 were identified as diagnostic markers and potential therapeutic targets for AS. DDIT3 was highly positively correlated with the infiltration levels of various immune cells, while HSPB1 was negatively correlated with the infiltration levels of several different types of immune cells. In conclusion, DDIT3 and HSPB1 may induce ferroptosis in the cells of patients with AS via changes in the inflammatory response in the immune microenvironment, and these genes could serve as molecular targets for AS therapy. Frontiers Media S.A. 2022-11-11 /pmc/articles/PMC9691995/ /pubmed/36437923 http://dx.doi.org/10.3389/fgene.2022.948290 Text en Copyright © 2022 Li, Chen, Yang, Wang, Ma, He, Li and Quan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Li, Qiaochu
Chen, Zhiyu
Yang, Chaohua
Wang, Linbang
Ma, Jingjin
He, Tao
Li, Huanhuan
Quan, Zhengxue
Role of ferroptosis-associated genes in ankylosing spondylitis and immune cell infiltration
title Role of ferroptosis-associated genes in ankylosing spondylitis and immune cell infiltration
title_full Role of ferroptosis-associated genes in ankylosing spondylitis and immune cell infiltration
title_fullStr Role of ferroptosis-associated genes in ankylosing spondylitis and immune cell infiltration
title_full_unstemmed Role of ferroptosis-associated genes in ankylosing spondylitis and immune cell infiltration
title_short Role of ferroptosis-associated genes in ankylosing spondylitis and immune cell infiltration
title_sort role of ferroptosis-associated genes in ankylosing spondylitis and immune cell infiltration
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9691995/
https://www.ncbi.nlm.nih.gov/pubmed/36437923
http://dx.doi.org/10.3389/fgene.2022.948290
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