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Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis
Currently, one of the most common causes of death worldwide is cancer. The development of innovative methods to support the early and accurate detection of cancers is required to increase the recovery rate of patients. Several studies have shown that medical Hyperspectral Imaging (HSI) combined with...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9693077/ https://www.ncbi.nlm.nih.gov/pubmed/36433516 http://dx.doi.org/10.3390/s22228917 |
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author | Martinez-Vega, Beatriz Tkachenko, Mariia Matkabi, Marianne Ortega, Samuel Fabelo, Himar Balea-Fernandez, Francisco La Salvia, Marco Torti, Emanuele Leporati, Francesco Callico, Gustavo M. Chalopin, Claire |
author_facet | Martinez-Vega, Beatriz Tkachenko, Mariia Matkabi, Marianne Ortega, Samuel Fabelo, Himar Balea-Fernandez, Francisco La Salvia, Marco Torti, Emanuele Leporati, Francesco Callico, Gustavo M. Chalopin, Claire |
author_sort | Martinez-Vega, Beatriz |
collection | PubMed |
description | Currently, one of the most common causes of death worldwide is cancer. The development of innovative methods to support the early and accurate detection of cancers is required to increase the recovery rate of patients. Several studies have shown that medical Hyperspectral Imaging (HSI) combined with artificial intelligence algorithms is a powerful tool for cancer detection. Various preprocessing methods are commonly applied to hyperspectral data to improve the performance of the algorithms. However, there is currently no standard for these methods, and no studies have compared them so far in the medical field. In this work, we evaluated different combinations of preprocessing steps, including spatial and spectral smoothing, Min-Max scaling, Standard Normal Variate normalization, and a median spatial smoothing technique, with the goal of improving tumor detection in three different HSI databases concerning colorectal, esophagogastric, and brain cancers. Two machine learning and deep learning models were used to perform the pixel-wise classification. The results showed that the choice of preprocessing method affects the performance of tumor identification. The method that showed slightly better results with respect to identifing colorectal tumors was Median Filter preprocessing (0.94 of area under the curve). On the other hand, esophagogastric and brain tumors were more accurately identified using Min-Max scaling preprocessing (0.93 and 0.92 of area under the curve, respectively). However, it is observed that the Median Filter method smooths sharp spectral features, resulting in high variability in the classification performance. Therefore, based on these results, obtained with different databases acquired by different HSI instrumentation, the most relevant preprocessing technique identified in this work is Min-Max scaling. |
format | Online Article Text |
id | pubmed-9693077 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96930772022-11-26 Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis Martinez-Vega, Beatriz Tkachenko, Mariia Matkabi, Marianne Ortega, Samuel Fabelo, Himar Balea-Fernandez, Francisco La Salvia, Marco Torti, Emanuele Leporati, Francesco Callico, Gustavo M. Chalopin, Claire Sensors (Basel) Article Currently, one of the most common causes of death worldwide is cancer. The development of innovative methods to support the early and accurate detection of cancers is required to increase the recovery rate of patients. Several studies have shown that medical Hyperspectral Imaging (HSI) combined with artificial intelligence algorithms is a powerful tool for cancer detection. Various preprocessing methods are commonly applied to hyperspectral data to improve the performance of the algorithms. However, there is currently no standard for these methods, and no studies have compared them so far in the medical field. In this work, we evaluated different combinations of preprocessing steps, including spatial and spectral smoothing, Min-Max scaling, Standard Normal Variate normalization, and a median spatial smoothing technique, with the goal of improving tumor detection in three different HSI databases concerning colorectal, esophagogastric, and brain cancers. Two machine learning and deep learning models were used to perform the pixel-wise classification. The results showed that the choice of preprocessing method affects the performance of tumor identification. The method that showed slightly better results with respect to identifing colorectal tumors was Median Filter preprocessing (0.94 of area under the curve). On the other hand, esophagogastric and brain tumors were more accurately identified using Min-Max scaling preprocessing (0.93 and 0.92 of area under the curve, respectively). However, it is observed that the Median Filter method smooths sharp spectral features, resulting in high variability in the classification performance. Therefore, based on these results, obtained with different databases acquired by different HSI instrumentation, the most relevant preprocessing technique identified in this work is Min-Max scaling. MDPI 2022-11-18 /pmc/articles/PMC9693077/ /pubmed/36433516 http://dx.doi.org/10.3390/s22228917 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Martinez-Vega, Beatriz Tkachenko, Mariia Matkabi, Marianne Ortega, Samuel Fabelo, Himar Balea-Fernandez, Francisco La Salvia, Marco Torti, Emanuele Leporati, Francesco Callico, Gustavo M. Chalopin, Claire Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis |
title | Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis |
title_full | Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis |
title_fullStr | Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis |
title_full_unstemmed | Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis |
title_short | Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis |
title_sort | evaluation of preprocessing methods on independent medical hyperspectral databases to improve analysis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9693077/ https://www.ncbi.nlm.nih.gov/pubmed/36433516 http://dx.doi.org/10.3390/s22228917 |
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