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Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis

Currently, one of the most common causes of death worldwide is cancer. The development of innovative methods to support the early and accurate detection of cancers is required to increase the recovery rate of patients. Several studies have shown that medical Hyperspectral Imaging (HSI) combined with...

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Autores principales: Martinez-Vega, Beatriz, Tkachenko, Mariia, Matkabi, Marianne, Ortega, Samuel, Fabelo, Himar, Balea-Fernandez, Francisco, La Salvia, Marco, Torti, Emanuele, Leporati, Francesco, Callico, Gustavo M., Chalopin, Claire
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9693077/
https://www.ncbi.nlm.nih.gov/pubmed/36433516
http://dx.doi.org/10.3390/s22228917
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author Martinez-Vega, Beatriz
Tkachenko, Mariia
Matkabi, Marianne
Ortega, Samuel
Fabelo, Himar
Balea-Fernandez, Francisco
La Salvia, Marco
Torti, Emanuele
Leporati, Francesco
Callico, Gustavo M.
Chalopin, Claire
author_facet Martinez-Vega, Beatriz
Tkachenko, Mariia
Matkabi, Marianne
Ortega, Samuel
Fabelo, Himar
Balea-Fernandez, Francisco
La Salvia, Marco
Torti, Emanuele
Leporati, Francesco
Callico, Gustavo M.
Chalopin, Claire
author_sort Martinez-Vega, Beatriz
collection PubMed
description Currently, one of the most common causes of death worldwide is cancer. The development of innovative methods to support the early and accurate detection of cancers is required to increase the recovery rate of patients. Several studies have shown that medical Hyperspectral Imaging (HSI) combined with artificial intelligence algorithms is a powerful tool for cancer detection. Various preprocessing methods are commonly applied to hyperspectral data to improve the performance of the algorithms. However, there is currently no standard for these methods, and no studies have compared them so far in the medical field. In this work, we evaluated different combinations of preprocessing steps, including spatial and spectral smoothing, Min-Max scaling, Standard Normal Variate normalization, and a median spatial smoothing technique, with the goal of improving tumor detection in three different HSI databases concerning colorectal, esophagogastric, and brain cancers. Two machine learning and deep learning models were used to perform the pixel-wise classification. The results showed that the choice of preprocessing method affects the performance of tumor identification. The method that showed slightly better results with respect to identifing colorectal tumors was Median Filter preprocessing (0.94 of area under the curve). On the other hand, esophagogastric and brain tumors were more accurately identified using Min-Max scaling preprocessing (0.93 and 0.92 of area under the curve, respectively). However, it is observed that the Median Filter method smooths sharp spectral features, resulting in high variability in the classification performance. Therefore, based on these results, obtained with different databases acquired by different HSI instrumentation, the most relevant preprocessing technique identified in this work is Min-Max scaling.
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spelling pubmed-96930772022-11-26 Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis Martinez-Vega, Beatriz Tkachenko, Mariia Matkabi, Marianne Ortega, Samuel Fabelo, Himar Balea-Fernandez, Francisco La Salvia, Marco Torti, Emanuele Leporati, Francesco Callico, Gustavo M. Chalopin, Claire Sensors (Basel) Article Currently, one of the most common causes of death worldwide is cancer. The development of innovative methods to support the early and accurate detection of cancers is required to increase the recovery rate of patients. Several studies have shown that medical Hyperspectral Imaging (HSI) combined with artificial intelligence algorithms is a powerful tool for cancer detection. Various preprocessing methods are commonly applied to hyperspectral data to improve the performance of the algorithms. However, there is currently no standard for these methods, and no studies have compared them so far in the medical field. In this work, we evaluated different combinations of preprocessing steps, including spatial and spectral smoothing, Min-Max scaling, Standard Normal Variate normalization, and a median spatial smoothing technique, with the goal of improving tumor detection in three different HSI databases concerning colorectal, esophagogastric, and brain cancers. Two machine learning and deep learning models were used to perform the pixel-wise classification. The results showed that the choice of preprocessing method affects the performance of tumor identification. The method that showed slightly better results with respect to identifing colorectal tumors was Median Filter preprocessing (0.94 of area under the curve). On the other hand, esophagogastric and brain tumors were more accurately identified using Min-Max scaling preprocessing (0.93 and 0.92 of area under the curve, respectively). However, it is observed that the Median Filter method smooths sharp spectral features, resulting in high variability in the classification performance. Therefore, based on these results, obtained with different databases acquired by different HSI instrumentation, the most relevant preprocessing technique identified in this work is Min-Max scaling. MDPI 2022-11-18 /pmc/articles/PMC9693077/ /pubmed/36433516 http://dx.doi.org/10.3390/s22228917 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Martinez-Vega, Beatriz
Tkachenko, Mariia
Matkabi, Marianne
Ortega, Samuel
Fabelo, Himar
Balea-Fernandez, Francisco
La Salvia, Marco
Torti, Emanuele
Leporati, Francesco
Callico, Gustavo M.
Chalopin, Claire
Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis
title Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis
title_full Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis
title_fullStr Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis
title_full_unstemmed Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis
title_short Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis
title_sort evaluation of preprocessing methods on independent medical hyperspectral databases to improve analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9693077/
https://www.ncbi.nlm.nih.gov/pubmed/36433516
http://dx.doi.org/10.3390/s22228917
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