Cargando…

DNA Sequence-Dependent Properties of Nucleosome Positioning in Regions of Distinct Chromatin States in Mouse Embryonic Stem Cells

Chromatin architecture is orchestrated, and plays crucial roles during the developmental process by regulating gene expression. In embryonic stem cells (ESCs), three types of chromatin states, including active, repressive and poised states, were previously identified and characterized with specific...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liu, Guoqing, Zhang, Zhi, Dong, Biyu, Liu, Jia
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9693356/ https://www.ncbi.nlm.nih.gov/pubmed/36430966 http://dx.doi.org/10.3390/ijms232214488

Ejemplares similares

Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals
por: Field, Yair, et al.
Publicado: (2008)

Two distinct modes of nucleosome modulation associated with different degrees of dependence of nucleosome positioning on the underlying DNA sequence
por: Dai, Zhiming, et al.
Publicado: (2009)

The implication of DNA bending energy for nucleosome positioning and sliding
por: Liu, Guoqing, et al.
Publicado: (2018)

A deformation energy model reveals sequence-dependent property of nucleosome positioning
por: Liu, Guoqing, et al.
Publicado: (2021)

Role of DNA sequence in chromatin remodeling and the formation of nucleosome-free regions
por: Lorch, Yahli, et al.
Publicado: (2014)

Nucleosome-free DNA regions differentially affect distant communication in chromatin
por: Nizovtseva, Ekaterina V., et al.
Publicado: (2017)

Weakly Positioned Nucleosomes Enhance the Transcriptional Competency of Chromatin
por: Belch, Yaakov, et al.
Publicado: (2010)

Bi-directional nucleosome sliding by the Chd1 chromatin remodeler integrates intrinsic sequence-dependent and ATP-dependent nucleosome positioning
por: Park, Sangwoo, et al.
Publicado: (2023)

DNA topology in chromatin is defined by nucleosome spacing
por: Nikitina, Tatiana, et al.
Publicado: (2017)

Chromatin and nucleosome dynamics in DNA damage and repair
por: Hauer, Michael H., et al.
Publicado: (2017)

Nucleosome Organization in Human Embryonic Stem Cells
por: Yazdi, Puya G., et al.
Publicado: (2015)

Engineered Chromatin Remodeling Proteins for Precise Nucleosome Positioning
por: Donovan, Drake A., et al.
Publicado: (2019)

DNA (de)methylation in embryonic stem cells controls CTCF-dependent chromatin boundaries
por: Wiehle, Laura, et al.
Publicado: (2019)

Characterization of Two Distinct Nucleosome Remodeling and Deacetylase (NuRD) Complex Assemblies in Embryonic Stem Cells
por: Bode, Daniel, et al.
Publicado: (2016)

Deform-nu: A DNA Deformation Energy-Based Predictor for Nucleosome Positioning
por: Liu, Guoqing, et al.
Publicado: (2020)

Insights into distinct regulatory modes of nucleosome positioning
por: Dai, Zhiming, et al.
Publicado: (2009)

Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters
por: Tolkunov, Denis, et al.
Publicado: (2011)

Accelerated Chromatin Biochemistry Using DNA-Barcoded Nucleosome Libraries
por: Nguyen, Uyen T. T., et al.
Publicado: (2014)

Chromatin assembly from nucleosome to heterochromatin: the issue of DNA damage
por: Almouzni, Geneviève
Publicado: (2013)

Regulation of chromatin folding by conformational variations of nucleosome linker DNA
por: Buckwalter, Jenna M., et al.
Publicado: (2017)

Nucleosome packing in interphase chromatin
Publicado: (1979)

Nucleosome Positioning with Set of Key Positions and Nucleosome Affinity
por: Wang, Jia, et al.
Publicado: (2014)

NPRD: Nucleosome Positioning Region Database
por: Levitsky, Victor G., et al.
Publicado: (2005)

Distal chromatin structure influences local nucleosome positions and gene expression
por: Jansen, An, et al.
Publicado: (2012)

Genome information processing by the INO80 chromatin remodeler positions nucleosomes
por: Oberbeckmann, Elisa, et al.
Publicado: (2021)

A hyperdynamic H3.3 nucleosome marks promoter regions in pluripotent embryonic stem cells
por: Schlesinger, Sharon, et al.
Publicado: (2017)

The mechanics behind DNA sequence-dependent properties of the nucleosome
por: Chua, Eugene Y. D., et al.
Publicado: (2012)

Deciphering Hierarchical Chromatin Domains and Preference of Genomic Position Forming Boundaries in Single Mouse Embryonic Stem Cells
por: Ye, Yusen, et al.
Publicado: (2023)

On the role of inter-nucleosomal interactions and intrinsic nucleosome dynamics in chromatin function
por: Krajewski, Wladyslaw A.
Publicado: (2016)

Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling
por: Sabantsev, Anton, et al.
Publicado: (2019)

Inhibition of CRISPR-Cas12a DNA targeting by nucleosomes and chromatin
por: Strohkendl, Isabel, et al.
Publicado: (2021)

Distinct mesoderm migration phenotypes in extra-embryonic and embryonic regions of the early mouse embryo
por: Saykali, Bechara, et al.
Publicado: (2019)

The impact of chromatin modifiers on the timing of locus replication in mouse embryonic stem cells
por: Jørgensen, Helle F, et al.
Publicado: (2007)

Transcriptome profiles and chromatin states in mouse androgenetic haploid embryonic stem cells
por: Zheng, Weisheng, et al.
Publicado: (2023)

Positional variations among heterogeneous nucleosome maps give dynamical information on chromatin
por: Tanaka, Yoshiaki, et al.
Publicado: (2010)

A conserved role of the RSC chromatin remodeler in the establishment of nucleosome-depleted regions
por: Yague-Sanz, Carlo, et al.
Publicado: (2016)

Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin
Publicado: (1979)

ATP-Dependent Chromatin Remodeling Factors and Their Roles in Affecting Nucleosome Fiber Composition
por: Piatti, Paolo, et al.
Publicado: (2011)

Serine ADP-ribosylation marks nucleosomes for ALC1-dependent chromatin remodeling
por: Mohapatra, Jugal, et al.
Publicado: (2021)

Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
por: Pott, Sebastian
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_kng8ouubbqmqhde0m153vkt57u