Cargando…

Comparative Evaluation of Luminex xTAG(®) Gastrointestinal Pathogen Panel and Direct-From-Stool Real-Time PCR for Detection of C. difficile Toxin tcdB in Stool Samples from a Pediatric Population

Detection of Clostridioides difficile toxins in patients with gastroenteritis has increasingly been accomplished through the use of enteric multiplex syndromic panels. Comparisons of the performance of these panels to both direct-from-stool (DFS) and culture-enriched stools followed by polymerase ch...

Descripción completa

Detalles Bibliográficos
Autores principales: Tyrrell, Hannah, Morin, Sarah B. N., Lloyd, Colin D., Parsons, Brendon, Stokowski, Taryn, Xie, Jianling, Zhuo, Ran, Lee, Bonita E., Pang, Xiao-Li, Freedman, Stephen B., Chui, Linda
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9693576/
https://www.ncbi.nlm.nih.gov/pubmed/36363805
http://dx.doi.org/10.3390/microorganisms10112214
_version_ 1784837578868916224
author Tyrrell, Hannah
Morin, Sarah B. N.
Lloyd, Colin D.
Parsons, Brendon
Stokowski, Taryn
Xie, Jianling
Zhuo, Ran
Lee, Bonita E.
Pang, Xiao-Li
Freedman, Stephen B.
Chui, Linda
author_facet Tyrrell, Hannah
Morin, Sarah B. N.
Lloyd, Colin D.
Parsons, Brendon
Stokowski, Taryn
Xie, Jianling
Zhuo, Ran
Lee, Bonita E.
Pang, Xiao-Li
Freedman, Stephen B.
Chui, Linda
author_sort Tyrrell, Hannah
collection PubMed
description Detection of Clostridioides difficile toxins in patients with gastroenteritis has increasingly been accomplished through the use of enteric multiplex syndromic panels. Comparisons of the performance of these panels to both direct-from-stool (DFS) and culture-enriched stools followed by polymerase chain reaction (PCR) methods in pediatric populations are limited. Here, we compare the performance of the Luminex xTAG(®) Gastrointestinal Pathogen Panel (GPP) to our DFS in-house real-time PCR (DFS RT-PCR) assay for the detection of C. difficile toxin gene, tcdB, using 2641 stool specimens collected from children enrolled in the Alberta Provincial Pediatric EnTeric Infection Team (APPETITE) study in Alberta, Canada. We used culture enrichment followed by in-house RT-PCR to resolve discordant results between the two assays. We found excellent agreement (k = 0.89) between the GPP and our DFS RT-PCR assay: the positive percent agreement between the two assays was 97%, and the negative percent agreement was 99%. GPP, a multi-analyte platform can easily be implemented into a routine diagnostic laboratory for detecting enteric pathogens including C. difficile.
format Online
Article
Text
id pubmed-9693576
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-96935762022-11-26 Comparative Evaluation of Luminex xTAG(®) Gastrointestinal Pathogen Panel and Direct-From-Stool Real-Time PCR for Detection of C. difficile Toxin tcdB in Stool Samples from a Pediatric Population Tyrrell, Hannah Morin, Sarah B. N. Lloyd, Colin D. Parsons, Brendon Stokowski, Taryn Xie, Jianling Zhuo, Ran Lee, Bonita E. Pang, Xiao-Li Freedman, Stephen B. Chui, Linda Microorganisms Article Detection of Clostridioides difficile toxins in patients with gastroenteritis has increasingly been accomplished through the use of enteric multiplex syndromic panels. Comparisons of the performance of these panels to both direct-from-stool (DFS) and culture-enriched stools followed by polymerase chain reaction (PCR) methods in pediatric populations are limited. Here, we compare the performance of the Luminex xTAG(®) Gastrointestinal Pathogen Panel (GPP) to our DFS in-house real-time PCR (DFS RT-PCR) assay for the detection of C. difficile toxin gene, tcdB, using 2641 stool specimens collected from children enrolled in the Alberta Provincial Pediatric EnTeric Infection Team (APPETITE) study in Alberta, Canada. We used culture enrichment followed by in-house RT-PCR to resolve discordant results between the two assays. We found excellent agreement (k = 0.89) between the GPP and our DFS RT-PCR assay: the positive percent agreement between the two assays was 97%, and the negative percent agreement was 99%. GPP, a multi-analyte platform can easily be implemented into a routine diagnostic laboratory for detecting enteric pathogens including C. difficile. MDPI 2022-11-09 /pmc/articles/PMC9693576/ /pubmed/36363805 http://dx.doi.org/10.3390/microorganisms10112214 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Tyrrell, Hannah
Morin, Sarah B. N.
Lloyd, Colin D.
Parsons, Brendon
Stokowski, Taryn
Xie, Jianling
Zhuo, Ran
Lee, Bonita E.
Pang, Xiao-Li
Freedman, Stephen B.
Chui, Linda
Comparative Evaluation of Luminex xTAG(®) Gastrointestinal Pathogen Panel and Direct-From-Stool Real-Time PCR for Detection of C. difficile Toxin tcdB in Stool Samples from a Pediatric Population
title Comparative Evaluation of Luminex xTAG(®) Gastrointestinal Pathogen Panel and Direct-From-Stool Real-Time PCR for Detection of C. difficile Toxin tcdB in Stool Samples from a Pediatric Population
title_full Comparative Evaluation of Luminex xTAG(®) Gastrointestinal Pathogen Panel and Direct-From-Stool Real-Time PCR for Detection of C. difficile Toxin tcdB in Stool Samples from a Pediatric Population
title_fullStr Comparative Evaluation of Luminex xTAG(®) Gastrointestinal Pathogen Panel and Direct-From-Stool Real-Time PCR for Detection of C. difficile Toxin tcdB in Stool Samples from a Pediatric Population
title_full_unstemmed Comparative Evaluation of Luminex xTAG(®) Gastrointestinal Pathogen Panel and Direct-From-Stool Real-Time PCR for Detection of C. difficile Toxin tcdB in Stool Samples from a Pediatric Population
title_short Comparative Evaluation of Luminex xTAG(®) Gastrointestinal Pathogen Panel and Direct-From-Stool Real-Time PCR for Detection of C. difficile Toxin tcdB in Stool Samples from a Pediatric Population
title_sort comparative evaluation of luminex xtag(®) gastrointestinal pathogen panel and direct-from-stool real-time pcr for detection of c. difficile toxin tcdb in stool samples from a pediatric population
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9693576/
https://www.ncbi.nlm.nih.gov/pubmed/36363805
http://dx.doi.org/10.3390/microorganisms10112214
work_keys_str_mv AT tyrrellhannah comparativeevaluationofluminexxtaggastrointestinalpathogenpanelanddirectfromstoolrealtimepcrfordetectionofcdifficiletoxintcdbinstoolsamplesfromapediatricpopulation
AT morinsarahbn comparativeevaluationofluminexxtaggastrointestinalpathogenpanelanddirectfromstoolrealtimepcrfordetectionofcdifficiletoxintcdbinstoolsamplesfromapediatricpopulation
AT lloydcolind comparativeevaluationofluminexxtaggastrointestinalpathogenpanelanddirectfromstoolrealtimepcrfordetectionofcdifficiletoxintcdbinstoolsamplesfromapediatricpopulation
AT parsonsbrendon comparativeevaluationofluminexxtaggastrointestinalpathogenpanelanddirectfromstoolrealtimepcrfordetectionofcdifficiletoxintcdbinstoolsamplesfromapediatricpopulation
AT stokowskitaryn comparativeevaluationofluminexxtaggastrointestinalpathogenpanelanddirectfromstoolrealtimepcrfordetectionofcdifficiletoxintcdbinstoolsamplesfromapediatricpopulation
AT xiejianling comparativeevaluationofluminexxtaggastrointestinalpathogenpanelanddirectfromstoolrealtimepcrfordetectionofcdifficiletoxintcdbinstoolsamplesfromapediatricpopulation
AT zhuoran comparativeevaluationofluminexxtaggastrointestinalpathogenpanelanddirectfromstoolrealtimepcrfordetectionofcdifficiletoxintcdbinstoolsamplesfromapediatricpopulation
AT leebonitae comparativeevaluationofluminexxtaggastrointestinalpathogenpanelanddirectfromstoolrealtimepcrfordetectionofcdifficiletoxintcdbinstoolsamplesfromapediatricpopulation
AT pangxiaoli comparativeevaluationofluminexxtaggastrointestinalpathogenpanelanddirectfromstoolrealtimepcrfordetectionofcdifficiletoxintcdbinstoolsamplesfromapediatricpopulation
AT freedmanstephenb comparativeevaluationofluminexxtaggastrointestinalpathogenpanelanddirectfromstoolrealtimepcrfordetectionofcdifficiletoxintcdbinstoolsamplesfromapediatricpopulation
AT chuilinda comparativeevaluationofluminexxtaggastrointestinalpathogenpanelanddirectfromstoolrealtimepcrfordetectionofcdifficiletoxintcdbinstoolsamplesfromapediatricpopulation