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Peptides for Coating TiO(2) Implants: An In Silico Approach

Titanium is usually used in the manufacturing of metal implants due to its biocompatibility and high resistance to corrosion. A structural and functional connection between the living bone and the surface of the implant, a process called osseointegration, is mandatory for avoiding prolonged healing,...

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Autores principales: Agrelli, Almerinda, Vasconcelos, Niedja Fittipaldi, da Silva, Rayane Cristine Santos, Mendes-Marques, Carina Lucena, Arruda, Isabel Renata de Souza, de Oliveira, Priscilla Stela Santana, Santos, Luzia Rejane Lisbôa, de Andrade, Audrey Nunes, de Moura, Ronald Rodrigues, Bernardo-Menezes, Lucas Coelho, da Silva, Natália Pereira, Machado, Giovanna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9693858/
https://www.ncbi.nlm.nih.gov/pubmed/36430525
http://dx.doi.org/10.3390/ijms232214048
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author Agrelli, Almerinda
Vasconcelos, Niedja Fittipaldi
da Silva, Rayane Cristine Santos
Mendes-Marques, Carina Lucena
Arruda, Isabel Renata de Souza
de Oliveira, Priscilla Stela Santana
Santos, Luzia Rejane Lisbôa
de Andrade, Audrey Nunes
de Moura, Ronald Rodrigues
Bernardo-Menezes, Lucas Coelho
da Silva, Natália Pereira
Machado, Giovanna
author_facet Agrelli, Almerinda
Vasconcelos, Niedja Fittipaldi
da Silva, Rayane Cristine Santos
Mendes-Marques, Carina Lucena
Arruda, Isabel Renata de Souza
de Oliveira, Priscilla Stela Santana
Santos, Luzia Rejane Lisbôa
de Andrade, Audrey Nunes
de Moura, Ronald Rodrigues
Bernardo-Menezes, Lucas Coelho
da Silva, Natália Pereira
Machado, Giovanna
author_sort Agrelli, Almerinda
collection PubMed
description Titanium is usually used in the manufacturing of metal implants due to its biocompatibility and high resistance to corrosion. A structural and functional connection between the living bone and the surface of the implant, a process called osseointegration, is mandatory for avoiding prolonged healing, infections, and tissue loss. Therefore, osseointegration is crucial for the success of the implantation procedure. Osseointegration is a process mediated by bone-matrix progenitor cells’ proteins, named integrins. In this study, we used an in silico approach to assemble and test peptides that can be strategically used in sensitizing TiO(2) implants in order to improve osseointegration. To do so, we downloaded PDB structures of integrins α5β1, αvβ3, and αIIbβ3; their biological ligands; and low-cost proteins from the Protein Data Bank, and then we performed a primary (integrin-protein) docking analysis. Furthermore, we modeled complex peptides with the potential to bind to the TiO(2) surface on the implant, as well as integrins in the bone-matrix progenitor cells. Then we performed a secondary (integrin–peptide) docking analysis. The ten most promising integrin–peptide docking results were further verified by molecular dynamics (MD) simulations. We recognized 82 peptides with great potential to bind the integrins, and therefore to be used in coating TiO(2) implants. Among them, peptides 1 (GHTHYHAVRTQTTGR), 3 (RKLPDATGR), and 8 (GHTHYHAVRTQTLKA) showed the highest binding stability during the MD simulations. This bioinformatics approach saves time and more effectively directs in vitro studies.
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spelling pubmed-96938582022-11-26 Peptides for Coating TiO(2) Implants: An In Silico Approach Agrelli, Almerinda Vasconcelos, Niedja Fittipaldi da Silva, Rayane Cristine Santos Mendes-Marques, Carina Lucena Arruda, Isabel Renata de Souza de Oliveira, Priscilla Stela Santana Santos, Luzia Rejane Lisbôa de Andrade, Audrey Nunes de Moura, Ronald Rodrigues Bernardo-Menezes, Lucas Coelho da Silva, Natália Pereira Machado, Giovanna Int J Mol Sci Article Titanium is usually used in the manufacturing of metal implants due to its biocompatibility and high resistance to corrosion. A structural and functional connection between the living bone and the surface of the implant, a process called osseointegration, is mandatory for avoiding prolonged healing, infections, and tissue loss. Therefore, osseointegration is crucial for the success of the implantation procedure. Osseointegration is a process mediated by bone-matrix progenitor cells’ proteins, named integrins. In this study, we used an in silico approach to assemble and test peptides that can be strategically used in sensitizing TiO(2) implants in order to improve osseointegration. To do so, we downloaded PDB structures of integrins α5β1, αvβ3, and αIIbβ3; their biological ligands; and low-cost proteins from the Protein Data Bank, and then we performed a primary (integrin-protein) docking analysis. Furthermore, we modeled complex peptides with the potential to bind to the TiO(2) surface on the implant, as well as integrins in the bone-matrix progenitor cells. Then we performed a secondary (integrin–peptide) docking analysis. The ten most promising integrin–peptide docking results were further verified by molecular dynamics (MD) simulations. We recognized 82 peptides with great potential to bind the integrins, and therefore to be used in coating TiO(2) implants. Among them, peptides 1 (GHTHYHAVRTQTTGR), 3 (RKLPDATGR), and 8 (GHTHYHAVRTQTLKA) showed the highest binding stability during the MD simulations. This bioinformatics approach saves time and more effectively directs in vitro studies. MDPI 2022-11-14 /pmc/articles/PMC9693858/ /pubmed/36430525 http://dx.doi.org/10.3390/ijms232214048 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Agrelli, Almerinda
Vasconcelos, Niedja Fittipaldi
da Silva, Rayane Cristine Santos
Mendes-Marques, Carina Lucena
Arruda, Isabel Renata de Souza
de Oliveira, Priscilla Stela Santana
Santos, Luzia Rejane Lisbôa
de Andrade, Audrey Nunes
de Moura, Ronald Rodrigues
Bernardo-Menezes, Lucas Coelho
da Silva, Natália Pereira
Machado, Giovanna
Peptides for Coating TiO(2) Implants: An In Silico Approach
title Peptides for Coating TiO(2) Implants: An In Silico Approach
title_full Peptides for Coating TiO(2) Implants: An In Silico Approach
title_fullStr Peptides for Coating TiO(2) Implants: An In Silico Approach
title_full_unstemmed Peptides for Coating TiO(2) Implants: An In Silico Approach
title_short Peptides for Coating TiO(2) Implants: An In Silico Approach
title_sort peptides for coating tio(2) implants: an in silico approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9693858/
https://www.ncbi.nlm.nih.gov/pubmed/36430525
http://dx.doi.org/10.3390/ijms232214048
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