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Peptides for Coating TiO(2) Implants: An In Silico Approach
Titanium is usually used in the manufacturing of metal implants due to its biocompatibility and high resistance to corrosion. A structural and functional connection between the living bone and the surface of the implant, a process called osseointegration, is mandatory for avoiding prolonged healing,...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9693858/ https://www.ncbi.nlm.nih.gov/pubmed/36430525 http://dx.doi.org/10.3390/ijms232214048 |
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author | Agrelli, Almerinda Vasconcelos, Niedja Fittipaldi da Silva, Rayane Cristine Santos Mendes-Marques, Carina Lucena Arruda, Isabel Renata de Souza de Oliveira, Priscilla Stela Santana Santos, Luzia Rejane Lisbôa de Andrade, Audrey Nunes de Moura, Ronald Rodrigues Bernardo-Menezes, Lucas Coelho da Silva, Natália Pereira Machado, Giovanna |
author_facet | Agrelli, Almerinda Vasconcelos, Niedja Fittipaldi da Silva, Rayane Cristine Santos Mendes-Marques, Carina Lucena Arruda, Isabel Renata de Souza de Oliveira, Priscilla Stela Santana Santos, Luzia Rejane Lisbôa de Andrade, Audrey Nunes de Moura, Ronald Rodrigues Bernardo-Menezes, Lucas Coelho da Silva, Natália Pereira Machado, Giovanna |
author_sort | Agrelli, Almerinda |
collection | PubMed |
description | Titanium is usually used in the manufacturing of metal implants due to its biocompatibility and high resistance to corrosion. A structural and functional connection between the living bone and the surface of the implant, a process called osseointegration, is mandatory for avoiding prolonged healing, infections, and tissue loss. Therefore, osseointegration is crucial for the success of the implantation procedure. Osseointegration is a process mediated by bone-matrix progenitor cells’ proteins, named integrins. In this study, we used an in silico approach to assemble and test peptides that can be strategically used in sensitizing TiO(2) implants in order to improve osseointegration. To do so, we downloaded PDB structures of integrins α5β1, αvβ3, and αIIbβ3; their biological ligands; and low-cost proteins from the Protein Data Bank, and then we performed a primary (integrin-protein) docking analysis. Furthermore, we modeled complex peptides with the potential to bind to the TiO(2) surface on the implant, as well as integrins in the bone-matrix progenitor cells. Then we performed a secondary (integrin–peptide) docking analysis. The ten most promising integrin–peptide docking results were further verified by molecular dynamics (MD) simulations. We recognized 82 peptides with great potential to bind the integrins, and therefore to be used in coating TiO(2) implants. Among them, peptides 1 (GHTHYHAVRTQTTGR), 3 (RKLPDATGR), and 8 (GHTHYHAVRTQTLKA) showed the highest binding stability during the MD simulations. This bioinformatics approach saves time and more effectively directs in vitro studies. |
format | Online Article Text |
id | pubmed-9693858 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96938582022-11-26 Peptides for Coating TiO(2) Implants: An In Silico Approach Agrelli, Almerinda Vasconcelos, Niedja Fittipaldi da Silva, Rayane Cristine Santos Mendes-Marques, Carina Lucena Arruda, Isabel Renata de Souza de Oliveira, Priscilla Stela Santana Santos, Luzia Rejane Lisbôa de Andrade, Audrey Nunes de Moura, Ronald Rodrigues Bernardo-Menezes, Lucas Coelho da Silva, Natália Pereira Machado, Giovanna Int J Mol Sci Article Titanium is usually used in the manufacturing of metal implants due to its biocompatibility and high resistance to corrosion. A structural and functional connection between the living bone and the surface of the implant, a process called osseointegration, is mandatory for avoiding prolonged healing, infections, and tissue loss. Therefore, osseointegration is crucial for the success of the implantation procedure. Osseointegration is a process mediated by bone-matrix progenitor cells’ proteins, named integrins. In this study, we used an in silico approach to assemble and test peptides that can be strategically used in sensitizing TiO(2) implants in order to improve osseointegration. To do so, we downloaded PDB structures of integrins α5β1, αvβ3, and αIIbβ3; their biological ligands; and low-cost proteins from the Protein Data Bank, and then we performed a primary (integrin-protein) docking analysis. Furthermore, we modeled complex peptides with the potential to bind to the TiO(2) surface on the implant, as well as integrins in the bone-matrix progenitor cells. Then we performed a secondary (integrin–peptide) docking analysis. The ten most promising integrin–peptide docking results were further verified by molecular dynamics (MD) simulations. We recognized 82 peptides with great potential to bind the integrins, and therefore to be used in coating TiO(2) implants. Among them, peptides 1 (GHTHYHAVRTQTTGR), 3 (RKLPDATGR), and 8 (GHTHYHAVRTQTLKA) showed the highest binding stability during the MD simulations. This bioinformatics approach saves time and more effectively directs in vitro studies. MDPI 2022-11-14 /pmc/articles/PMC9693858/ /pubmed/36430525 http://dx.doi.org/10.3390/ijms232214048 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Agrelli, Almerinda Vasconcelos, Niedja Fittipaldi da Silva, Rayane Cristine Santos Mendes-Marques, Carina Lucena Arruda, Isabel Renata de Souza de Oliveira, Priscilla Stela Santana Santos, Luzia Rejane Lisbôa de Andrade, Audrey Nunes de Moura, Ronald Rodrigues Bernardo-Menezes, Lucas Coelho da Silva, Natália Pereira Machado, Giovanna Peptides for Coating TiO(2) Implants: An In Silico Approach |
title | Peptides for Coating TiO(2) Implants: An In Silico Approach |
title_full | Peptides for Coating TiO(2) Implants: An In Silico Approach |
title_fullStr | Peptides for Coating TiO(2) Implants: An In Silico Approach |
title_full_unstemmed | Peptides for Coating TiO(2) Implants: An In Silico Approach |
title_short | Peptides for Coating TiO(2) Implants: An In Silico Approach |
title_sort | peptides for coating tio(2) implants: an in silico approach |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9693858/ https://www.ncbi.nlm.nih.gov/pubmed/36430525 http://dx.doi.org/10.3390/ijms232214048 |
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