Cargando…

Theoretical-Computational Modeling of Gas-State Thermodynamics in Flexible Molecular Systems: Ionic Liquids in the Gas Phase as a Case Study

A theoretical-computational procedure based on the quasi-Gaussian entropy (QGE) theory and molecular dynamics (MD) simulations is proposed for the calculation of thermodynamic properties for molecular and supra-molecular species in the gas phase. The peculiarity of the methodology reported in this s...

Descripción completa

Detalles Bibliográficos
Autores principales: Amadei, Andrea, Ciccioli, Andrea, Filippi, Antonello, Fraschetti, Caterina, Aschi, Massimiliano
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9694092/
https://www.ncbi.nlm.nih.gov/pubmed/36431963
http://dx.doi.org/10.3390/molecules27227863
_version_ 1784837712519364608
author Amadei, Andrea
Ciccioli, Andrea
Filippi, Antonello
Fraschetti, Caterina
Aschi, Massimiliano
author_facet Amadei, Andrea
Ciccioli, Andrea
Filippi, Antonello
Fraschetti, Caterina
Aschi, Massimiliano
author_sort Amadei, Andrea
collection PubMed
description A theoretical-computational procedure based on the quasi-Gaussian entropy (QGE) theory and molecular dynamics (MD) simulations is proposed for the calculation of thermodynamic properties for molecular and supra-molecular species in the gas phase. The peculiarity of the methodology reported in this study is its ability to construct an analytical model of all the most relevant thermodynamic properties, even within a wide temperature range, based on a practically automatic sampling of the entire conformational repertoire of highly flexible systems, thereby bypassing the need for an explicit search for all possible conformers/rotamers deemed relevant. In this respect, the reliability of the presented method mainly depends on the quality of the force field used in the MD simulations and on the ability to discriminate in a physically coherent way between semi-classical and quantum degrees of freedom. The method was tested on six model systems (n-butane, n-butane, n-octanol, octadecane, 1-butyl-3-methylimidazolium hexafluorophosphate and 1-butyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide ionic pairs), which, being experimentally characterized and already addressed by other theoretical-computational methods, were considered as particularly suitable to allow us to evaluate the method’s accuracy and efficiency, bringing out advantages and possible drawbacks. The results demonstrate that such a physically coherent yet relatively simple method can represent a further valid computational tool that is alternative and complementary to other extremely efficient computational methods, as it is particularly suited for addressing the thermodynamics of gaseous systems with a high conformational complexity over a large range of temperature.
format Online
Article
Text
id pubmed-9694092
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-96940922022-11-26 Theoretical-Computational Modeling of Gas-State Thermodynamics in Flexible Molecular Systems: Ionic Liquids in the Gas Phase as a Case Study Amadei, Andrea Ciccioli, Andrea Filippi, Antonello Fraschetti, Caterina Aschi, Massimiliano Molecules Article A theoretical-computational procedure based on the quasi-Gaussian entropy (QGE) theory and molecular dynamics (MD) simulations is proposed for the calculation of thermodynamic properties for molecular and supra-molecular species in the gas phase. The peculiarity of the methodology reported in this study is its ability to construct an analytical model of all the most relevant thermodynamic properties, even within a wide temperature range, based on a practically automatic sampling of the entire conformational repertoire of highly flexible systems, thereby bypassing the need for an explicit search for all possible conformers/rotamers deemed relevant. In this respect, the reliability of the presented method mainly depends on the quality of the force field used in the MD simulations and on the ability to discriminate in a physically coherent way between semi-classical and quantum degrees of freedom. The method was tested on six model systems (n-butane, n-butane, n-octanol, octadecane, 1-butyl-3-methylimidazolium hexafluorophosphate and 1-butyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide ionic pairs), which, being experimentally characterized and already addressed by other theoretical-computational methods, were considered as particularly suitable to allow us to evaluate the method’s accuracy and efficiency, bringing out advantages and possible drawbacks. The results demonstrate that such a physically coherent yet relatively simple method can represent a further valid computational tool that is alternative and complementary to other extremely efficient computational methods, as it is particularly suited for addressing the thermodynamics of gaseous systems with a high conformational complexity over a large range of temperature. MDPI 2022-11-14 /pmc/articles/PMC9694092/ /pubmed/36431963 http://dx.doi.org/10.3390/molecules27227863 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Amadei, Andrea
Ciccioli, Andrea
Filippi, Antonello
Fraschetti, Caterina
Aschi, Massimiliano
Theoretical-Computational Modeling of Gas-State Thermodynamics in Flexible Molecular Systems: Ionic Liquids in the Gas Phase as a Case Study
title Theoretical-Computational Modeling of Gas-State Thermodynamics in Flexible Molecular Systems: Ionic Liquids in the Gas Phase as a Case Study
title_full Theoretical-Computational Modeling of Gas-State Thermodynamics in Flexible Molecular Systems: Ionic Liquids in the Gas Phase as a Case Study
title_fullStr Theoretical-Computational Modeling of Gas-State Thermodynamics in Flexible Molecular Systems: Ionic Liquids in the Gas Phase as a Case Study
title_full_unstemmed Theoretical-Computational Modeling of Gas-State Thermodynamics in Flexible Molecular Systems: Ionic Liquids in the Gas Phase as a Case Study
title_short Theoretical-Computational Modeling of Gas-State Thermodynamics in Flexible Molecular Systems: Ionic Liquids in the Gas Phase as a Case Study
title_sort theoretical-computational modeling of gas-state thermodynamics in flexible molecular systems: ionic liquids in the gas phase as a case study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9694092/
https://www.ncbi.nlm.nih.gov/pubmed/36431963
http://dx.doi.org/10.3390/molecules27227863
work_keys_str_mv AT amadeiandrea theoreticalcomputationalmodelingofgasstatethermodynamicsinflexiblemolecularsystemsionicliquidsinthegasphaseasacasestudy
AT ciccioliandrea theoreticalcomputationalmodelingofgasstatethermodynamicsinflexiblemolecularsystemsionicliquidsinthegasphaseasacasestudy
AT filippiantonello theoreticalcomputationalmodelingofgasstatethermodynamicsinflexiblemolecularsystemsionicliquidsinthegasphaseasacasestudy
AT fraschetticaterina theoreticalcomputationalmodelingofgasstatethermodynamicsinflexiblemolecularsystemsionicliquidsinthegasphaseasacasestudy
AT aschimassimiliano theoreticalcomputationalmodelingofgasstatethermodynamicsinflexiblemolecularsystemsionicliquidsinthegasphaseasacasestudy