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To shift or to rotate? Comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging

Multi-slice (MS) super-resolution reconstruction (SRR) methods have been proposed to improve the trade-off between resolution, signal-to-noise ratio and scan time in magnetic resonance imaging. MS-SRR consists in the estimation of an isotropic high-resolution image from a series of anisotropic MS im...

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Autores principales: Nicastro, Michele, Jeurissen, Ben, Beirinckx, Quinten, Smekens, Céline, Poot, Dirk H. J., Sijbers, Jan, den Dekker, Arnold J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9694825/
https://www.ncbi.nlm.nih.gov/pubmed/36440272
http://dx.doi.org/10.3389/fnins.2022.1044510
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author Nicastro, Michele
Jeurissen, Ben
Beirinckx, Quinten
Smekens, Céline
Poot, Dirk H. J.
Sijbers, Jan
den Dekker, Arnold J.
author_facet Nicastro, Michele
Jeurissen, Ben
Beirinckx, Quinten
Smekens, Céline
Poot, Dirk H. J.
Sijbers, Jan
den Dekker, Arnold J.
author_sort Nicastro, Michele
collection PubMed
description Multi-slice (MS) super-resolution reconstruction (SRR) methods have been proposed to improve the trade-off between resolution, signal-to-noise ratio and scan time in magnetic resonance imaging. MS-SRR consists in the estimation of an isotropic high-resolution image from a series of anisotropic MS images with a low through-plane resolution, where the anisotropic low-resolution images can be acquired according to different acquisition schemes. However, it is yet unclear how these schemes compare in terms of statistical performance criteria, especially for regularized MS-SRR. In this work, the estimation performance of two commonly adopted MS-SRR acquisition schemes based on shifted and rotated MS images respectively are evaluated in a Bayesian framework. The maximum a posteriori estimator, which introduces regularization by incorporating prior knowledge in a statistically well-defined way, is put forward as the estimator of choice and its accuracy, precision, and Bayesian mean squared error (BMSE) are used as performance criteria. Analytic calculations as well as Monte Carlo simulation experiments show that the rotated scheme outperforms the shifted scheme in terms of precision, accuracy, and BMSE. Furthermore, the superior performance of the rotated scheme is confirmed in real data experiments and in retrospective simulation experiments with and without inter-image motion. Results show that the rotated scheme allows regularized MS-SRR with a higher accuracy and precision than the shifted scheme, besides being more resilient to motion.
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spelling pubmed-96948252022-11-26 To shift or to rotate? Comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging Nicastro, Michele Jeurissen, Ben Beirinckx, Quinten Smekens, Céline Poot, Dirk H. J. Sijbers, Jan den Dekker, Arnold J. Front Neurosci Neuroscience Multi-slice (MS) super-resolution reconstruction (SRR) methods have been proposed to improve the trade-off between resolution, signal-to-noise ratio and scan time in magnetic resonance imaging. MS-SRR consists in the estimation of an isotropic high-resolution image from a series of anisotropic MS images with a low through-plane resolution, where the anisotropic low-resolution images can be acquired according to different acquisition schemes. However, it is yet unclear how these schemes compare in terms of statistical performance criteria, especially for regularized MS-SRR. In this work, the estimation performance of two commonly adopted MS-SRR acquisition schemes based on shifted and rotated MS images respectively are evaluated in a Bayesian framework. The maximum a posteriori estimator, which introduces regularization by incorporating prior knowledge in a statistically well-defined way, is put forward as the estimator of choice and its accuracy, precision, and Bayesian mean squared error (BMSE) are used as performance criteria. Analytic calculations as well as Monte Carlo simulation experiments show that the rotated scheme outperforms the shifted scheme in terms of precision, accuracy, and BMSE. Furthermore, the superior performance of the rotated scheme is confirmed in real data experiments and in retrospective simulation experiments with and without inter-image motion. Results show that the rotated scheme allows regularized MS-SRR with a higher accuracy and precision than the shifted scheme, besides being more resilient to motion. Frontiers Media S.A. 2022-11-11 /pmc/articles/PMC9694825/ /pubmed/36440272 http://dx.doi.org/10.3389/fnins.2022.1044510 Text en Copyright © 2022 Nicastro, Jeurissen, Beirinckx, Smekens, Poot, Sijbers and den Dekker. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Nicastro, Michele
Jeurissen, Ben
Beirinckx, Quinten
Smekens, Céline
Poot, Dirk H. J.
Sijbers, Jan
den Dekker, Arnold J.
To shift or to rotate? Comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging
title To shift or to rotate? Comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging
title_full To shift or to rotate? Comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging
title_fullStr To shift or to rotate? Comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging
title_full_unstemmed To shift or to rotate? Comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging
title_short To shift or to rotate? Comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging
title_sort to shift or to rotate? comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9694825/
https://www.ncbi.nlm.nih.gov/pubmed/36440272
http://dx.doi.org/10.3389/fnins.2022.1044510
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