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A Web-Based Automated Image Processing Research Platform for Cochlear Implantation-Related Studies

The robust delineation of the cochlea and its inner structures combined with the detection of the electrode of a cochlear implant within these structures is essential for envisaging a safer, more individualized, routine image-guided cochlear implant therapy. We present Nautilus—a web-based research...

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Autores principales: Margeta, Jan, Hussain, Raabid, López Diez, Paula, Morgenstern, Anika, Demarcy, Thomas, Wang, Zihao, Gnansia, Dan, Martinez Manzanera, Octavio, Vandersteen, Clair, Delingette, Hervé, Buechner, Andreas, Lenarz, Thomas, Patou, François, Guevara, Nicolas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9699139/
https://www.ncbi.nlm.nih.gov/pubmed/36431117
http://dx.doi.org/10.3390/jcm11226640
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author Margeta, Jan
Hussain, Raabid
López Diez, Paula
Morgenstern, Anika
Demarcy, Thomas
Wang, Zihao
Gnansia, Dan
Martinez Manzanera, Octavio
Vandersteen, Clair
Delingette, Hervé
Buechner, Andreas
Lenarz, Thomas
Patou, François
Guevara, Nicolas
author_facet Margeta, Jan
Hussain, Raabid
López Diez, Paula
Morgenstern, Anika
Demarcy, Thomas
Wang, Zihao
Gnansia, Dan
Martinez Manzanera, Octavio
Vandersteen, Clair
Delingette, Hervé
Buechner, Andreas
Lenarz, Thomas
Patou, François
Guevara, Nicolas
author_sort Margeta, Jan
collection PubMed
description The robust delineation of the cochlea and its inner structures combined with the detection of the electrode of a cochlear implant within these structures is essential for envisaging a safer, more individualized, routine image-guided cochlear implant therapy. We present Nautilus—a web-based research platform for automated pre- and post-implantation cochlear analysis. Nautilus delineates cochlear structures from pre-operative clinical CT images by combining deep learning and Bayesian inference approaches. It enables the extraction of electrode locations from a post-operative CT image using convolutional neural networks and geometrical inference. By fusing pre- and post-operative images, Nautilus is able to provide a set of personalized pre- and post-operative metrics that can serve the exploration of clinically relevant questions in cochlear implantation therapy. In addition, Nautilus embeds a self-assessment module providing a confidence rating on the outputs of its pipeline. We present a detailed accuracy and robustness analyses of the tool on a carefully designed dataset. The results of these analyses provide legitimate grounds for envisaging the implementation of image-guided cochlear implant practices into routine clinical workflows.
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spelling pubmed-96991392022-11-26 A Web-Based Automated Image Processing Research Platform for Cochlear Implantation-Related Studies Margeta, Jan Hussain, Raabid López Diez, Paula Morgenstern, Anika Demarcy, Thomas Wang, Zihao Gnansia, Dan Martinez Manzanera, Octavio Vandersteen, Clair Delingette, Hervé Buechner, Andreas Lenarz, Thomas Patou, François Guevara, Nicolas J Clin Med Article The robust delineation of the cochlea and its inner structures combined with the detection of the electrode of a cochlear implant within these structures is essential for envisaging a safer, more individualized, routine image-guided cochlear implant therapy. We present Nautilus—a web-based research platform for automated pre- and post-implantation cochlear analysis. Nautilus delineates cochlear structures from pre-operative clinical CT images by combining deep learning and Bayesian inference approaches. It enables the extraction of electrode locations from a post-operative CT image using convolutional neural networks and geometrical inference. By fusing pre- and post-operative images, Nautilus is able to provide a set of personalized pre- and post-operative metrics that can serve the exploration of clinically relevant questions in cochlear implantation therapy. In addition, Nautilus embeds a self-assessment module providing a confidence rating on the outputs of its pipeline. We present a detailed accuracy and robustness analyses of the tool on a carefully designed dataset. The results of these analyses provide legitimate grounds for envisaging the implementation of image-guided cochlear implant practices into routine clinical workflows. MDPI 2022-11-09 /pmc/articles/PMC9699139/ /pubmed/36431117 http://dx.doi.org/10.3390/jcm11226640 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Margeta, Jan
Hussain, Raabid
López Diez, Paula
Morgenstern, Anika
Demarcy, Thomas
Wang, Zihao
Gnansia, Dan
Martinez Manzanera, Octavio
Vandersteen, Clair
Delingette, Hervé
Buechner, Andreas
Lenarz, Thomas
Patou, François
Guevara, Nicolas
A Web-Based Automated Image Processing Research Platform for Cochlear Implantation-Related Studies
title A Web-Based Automated Image Processing Research Platform for Cochlear Implantation-Related Studies
title_full A Web-Based Automated Image Processing Research Platform for Cochlear Implantation-Related Studies
title_fullStr A Web-Based Automated Image Processing Research Platform for Cochlear Implantation-Related Studies
title_full_unstemmed A Web-Based Automated Image Processing Research Platform for Cochlear Implantation-Related Studies
title_short A Web-Based Automated Image Processing Research Platform for Cochlear Implantation-Related Studies
title_sort web-based automated image processing research platform for cochlear implantation-related studies
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9699139/
https://www.ncbi.nlm.nih.gov/pubmed/36431117
http://dx.doi.org/10.3390/jcm11226640
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