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Association Complexes of Calix[6]arenes with Amino Acids Explained by Energy-Partitioning Methods
Intermolecular complexes with calixarenes are intriguing because of multiple possibilities of noncovalent binding for both polar and nonpolar molecules, including docking in the calixarene cavity. In this contribution calix[6]arenes interacting with amino acids are studied with an additional aim to...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9699162/ https://www.ncbi.nlm.nih.gov/pubmed/36432040 http://dx.doi.org/10.3390/molecules27227938 |
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author | Masoumifeshani, Emran Chojecki, Michał Rutkowska-Zbik, Dorota Korona, Tatiana |
author_facet | Masoumifeshani, Emran Chojecki, Michał Rutkowska-Zbik, Dorota Korona, Tatiana |
author_sort | Masoumifeshani, Emran |
collection | PubMed |
description | Intermolecular complexes with calixarenes are intriguing because of multiple possibilities of noncovalent binding for both polar and nonpolar molecules, including docking in the calixarene cavity. In this contribution calix[6]arenes interacting with amino acids are studied with an additional aim to show that tools such as symmetry-adapted perturbation theory (SAPT), functional-group SAPT (F-SAPT), and systematic molecular fragmentation (SMF) methods may provide explanations for different numbers of noncovalent bonds and of their varying strength for various calixarene conformers and guest molecules. The partitioning of the interaction energy provides an easy way to identify hydrogen bonds, including those with unconventional hydrogen acceptors, as well as other noncovalent bonds, and to find repulsive destabilizing interactions between functional groups. Various other features can be explained by energy partitioning, such as the red shift of an IR stretching frequency for some hydroxy groups, which arises from their attraction to the phenyl ring of calixarene. Pairs of hydrogen bonds and other noncovalent bonds of similar magnitude found by F-SAPT explain an increase in the stability of both inclusion and outer complexes. |
format | Online Article Text |
id | pubmed-9699162 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96991622022-11-26 Association Complexes of Calix[6]arenes with Amino Acids Explained by Energy-Partitioning Methods Masoumifeshani, Emran Chojecki, Michał Rutkowska-Zbik, Dorota Korona, Tatiana Molecules Article Intermolecular complexes with calixarenes are intriguing because of multiple possibilities of noncovalent binding for both polar and nonpolar molecules, including docking in the calixarene cavity. In this contribution calix[6]arenes interacting with amino acids are studied with an additional aim to show that tools such as symmetry-adapted perturbation theory (SAPT), functional-group SAPT (F-SAPT), and systematic molecular fragmentation (SMF) methods may provide explanations for different numbers of noncovalent bonds and of their varying strength for various calixarene conformers and guest molecules. The partitioning of the interaction energy provides an easy way to identify hydrogen bonds, including those with unconventional hydrogen acceptors, as well as other noncovalent bonds, and to find repulsive destabilizing interactions between functional groups. Various other features can be explained by energy partitioning, such as the red shift of an IR stretching frequency for some hydroxy groups, which arises from their attraction to the phenyl ring of calixarene. Pairs of hydrogen bonds and other noncovalent bonds of similar magnitude found by F-SAPT explain an increase in the stability of both inclusion and outer complexes. MDPI 2022-11-16 /pmc/articles/PMC9699162/ /pubmed/36432040 http://dx.doi.org/10.3390/molecules27227938 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Masoumifeshani, Emran Chojecki, Michał Rutkowska-Zbik, Dorota Korona, Tatiana Association Complexes of Calix[6]arenes with Amino Acids Explained by Energy-Partitioning Methods |
title | Association Complexes of Calix[6]arenes with Amino Acids Explained by Energy-Partitioning Methods |
title_full | Association Complexes of Calix[6]arenes with Amino Acids Explained by Energy-Partitioning Methods |
title_fullStr | Association Complexes of Calix[6]arenes with Amino Acids Explained by Energy-Partitioning Methods |
title_full_unstemmed | Association Complexes of Calix[6]arenes with Amino Acids Explained by Energy-Partitioning Methods |
title_short | Association Complexes of Calix[6]arenes with Amino Acids Explained by Energy-Partitioning Methods |
title_sort | association complexes of calix[6]arenes with amino acids explained by energy-partitioning methods |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9699162/ https://www.ncbi.nlm.nih.gov/pubmed/36432040 http://dx.doi.org/10.3390/molecules27227938 |
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