Cargando…

Machine learning did not beat logistic regression in time series prediction for severe asthma exacerbations

Early detection of severe asthma exacerbations through home monitoring data in patients with stable mild-to-moderate chronic asthma could help to timely adjust medication. We evaluated the potential of machine learning methods compared to a clinical rule and logistic regression to predict severe exa...

Descripción completa

Detalles Bibliográficos
Autores principales: de Hond, Anne A. H., Kant, Ilse M. J., Honkoop, Persijn J., Smith, Andrew D., Steyerberg, Ewout W., Sont, Jacob K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9701686/
https://www.ncbi.nlm.nih.gov/pubmed/36437306
http://dx.doi.org/10.1038/s41598-022-24909-9
_version_ 1784839588565483520
author de Hond, Anne A. H.
Kant, Ilse M. J.
Honkoop, Persijn J.
Smith, Andrew D.
Steyerberg, Ewout W.
Sont, Jacob K.
author_facet de Hond, Anne A. H.
Kant, Ilse M. J.
Honkoop, Persijn J.
Smith, Andrew D.
Steyerberg, Ewout W.
Sont, Jacob K.
author_sort de Hond, Anne A. H.
collection PubMed
description Early detection of severe asthma exacerbations through home monitoring data in patients with stable mild-to-moderate chronic asthma could help to timely adjust medication. We evaluated the potential of machine learning methods compared to a clinical rule and logistic regression to predict severe exacerbations. We used daily home monitoring data from two studies in asthma patients (development: n = 165 and validation: n = 101 patients). Two ML models (XGBoost, one class SVM) and a logistic regression model provided predictions based on peak expiratory flow and asthma symptoms. These models were compared with an asthma action plan rule. Severe exacerbations occurred in 0.2% of all daily measurements in the development (154/92,787 days) and validation cohorts (94/40,185 days). The AUC of the best performing XGBoost was 0.85 (0.82–0.87) and 0.88 (0.86–0.90) for logistic regression in the validation cohort. The XGBoost model provided overly extreme risk estimates, whereas the logistic regression underestimated predicted risks. Sensitivity and specificity were better overall for XGBoost and logistic regression compared to one class SVM and the clinical rule. We conclude that ML models did not beat logistic regression in predicting short-term severe asthma exacerbations based on home monitoring data. Clinical application remains challenging in settings with low event incidence and high false alarm rates with high sensitivity.
format Online
Article
Text
id pubmed-9701686
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-97016862022-11-29 Machine learning did not beat logistic regression in time series prediction for severe asthma exacerbations de Hond, Anne A. H. Kant, Ilse M. J. Honkoop, Persijn J. Smith, Andrew D. Steyerberg, Ewout W. Sont, Jacob K. Sci Rep Article Early detection of severe asthma exacerbations through home monitoring data in patients with stable mild-to-moderate chronic asthma could help to timely adjust medication. We evaluated the potential of machine learning methods compared to a clinical rule and logistic regression to predict severe exacerbations. We used daily home monitoring data from two studies in asthma patients (development: n = 165 and validation: n = 101 patients). Two ML models (XGBoost, one class SVM) and a logistic regression model provided predictions based on peak expiratory flow and asthma symptoms. These models were compared with an asthma action plan rule. Severe exacerbations occurred in 0.2% of all daily measurements in the development (154/92,787 days) and validation cohorts (94/40,185 days). The AUC of the best performing XGBoost was 0.85 (0.82–0.87) and 0.88 (0.86–0.90) for logistic regression in the validation cohort. The XGBoost model provided overly extreme risk estimates, whereas the logistic regression underestimated predicted risks. Sensitivity and specificity were better overall for XGBoost and logistic regression compared to one class SVM and the clinical rule. We conclude that ML models did not beat logistic regression in predicting short-term severe asthma exacerbations based on home monitoring data. Clinical application remains challenging in settings with low event incidence and high false alarm rates with high sensitivity. Nature Publishing Group UK 2022-11-27 /pmc/articles/PMC9701686/ /pubmed/36437306 http://dx.doi.org/10.1038/s41598-022-24909-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
de Hond, Anne A. H.
Kant, Ilse M. J.
Honkoop, Persijn J.
Smith, Andrew D.
Steyerberg, Ewout W.
Sont, Jacob K.
Machine learning did not beat logistic regression in time series prediction for severe asthma exacerbations
title Machine learning did not beat logistic regression in time series prediction for severe asthma exacerbations
title_full Machine learning did not beat logistic regression in time series prediction for severe asthma exacerbations
title_fullStr Machine learning did not beat logistic regression in time series prediction for severe asthma exacerbations
title_full_unstemmed Machine learning did not beat logistic regression in time series prediction for severe asthma exacerbations
title_short Machine learning did not beat logistic regression in time series prediction for severe asthma exacerbations
title_sort machine learning did not beat logistic regression in time series prediction for severe asthma exacerbations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9701686/
https://www.ncbi.nlm.nih.gov/pubmed/36437306
http://dx.doi.org/10.1038/s41598-022-24909-9
work_keys_str_mv AT dehondanneah machinelearningdidnotbeatlogisticregressionintimeseriespredictionforsevereasthmaexacerbations
AT kantilsemj machinelearningdidnotbeatlogisticregressionintimeseriespredictionforsevereasthmaexacerbations
AT honkooppersijnj machinelearningdidnotbeatlogisticregressionintimeseriespredictionforsevereasthmaexacerbations
AT smithandrewd machinelearningdidnotbeatlogisticregressionintimeseriespredictionforsevereasthmaexacerbations
AT steyerbergewoutw machinelearningdidnotbeatlogisticregressionintimeseriespredictionforsevereasthmaexacerbations
AT sontjacobk machinelearningdidnotbeatlogisticregressionintimeseriespredictionforsevereasthmaexacerbations