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Development of a new screening method for faster kinship analyses in mass disasters: a proof of concept study

Kinship analysis in forensics is based on the calculation of the respective kinship indices. However, this calculation is only possible when the subject under identification has been associated with a particular population, whose allele frequency data is available for the particular set of STR marke...

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Autores principales: Kakkar, Sonia, Sarma, Phulen, Panigrahi, Inusha, Mandal, S. P., Shrivastava, Pankaj, Kumawat, R. K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9701697/
https://www.ncbi.nlm.nih.gov/pubmed/36437267
http://dx.doi.org/10.1038/s41598-022-22805-w
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author Kakkar, Sonia
Sarma, Phulen
Panigrahi, Inusha
Mandal, S. P.
Shrivastava, Pankaj
Kumawat, R. K.
author_facet Kakkar, Sonia
Sarma, Phulen
Panigrahi, Inusha
Mandal, S. P.
Shrivastava, Pankaj
Kumawat, R. K.
author_sort Kakkar, Sonia
collection PubMed
description Kinship analysis in forensics is based on the calculation of the respective kinship indices. However, this calculation is only possible when the subject under identification has been associated with a particular population, whose allele frequency data is available for the particular set of STR markers used in the forensic practices. In the case of mass disasters, where a large number of individuals are to be identified, gathering the population frequency data and calculating the kinship indices can be an intricate process which requires a lot of time and huge resources. The new method of allele matching cut off score (AMCOS) developed in this study is based on the allele sharing approach. This approach simply refers to the number of shared alleles (1 or 2) between the two individuals; also known as identical by state (IBS) alleles which might have been inherited from a recent common ancestor in which the alleles are identical by descendent (IBD). In case of mass disasters, this method can be used to narrow down the number of pairs (dead and alive) to be matched for kinship without using the allele frequency data. The results obtained from this method could further be confirmed by LR based method, which uses the allele frequency data of the respective population of the pairs being tested for kinship. AMCOS method has been tested for its sensitivity, specificity and various other statistical parameters and has shown promising values for the same in various types of kinship analyses. This ascertains the authenticity and potential use of this method in forensic practice but only after its validation in a larger sample size. AMCOS method has been tested on siblings and grandparent-grandchildren by using autosomal and X-STR markers both, as the reference samples from the parents cannot always be available for the identification. The present study also compared the results shown by the autosomal and X-STR markers in siblings and grandparent-grandchildren identification, thereby suggesting the use of better set of markers on the basis of obtained values of various statistical parameters.
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spelling pubmed-97016972022-11-29 Development of a new screening method for faster kinship analyses in mass disasters: a proof of concept study Kakkar, Sonia Sarma, Phulen Panigrahi, Inusha Mandal, S. P. Shrivastava, Pankaj Kumawat, R. K. Sci Rep Article Kinship analysis in forensics is based on the calculation of the respective kinship indices. However, this calculation is only possible when the subject under identification has been associated with a particular population, whose allele frequency data is available for the particular set of STR markers used in the forensic practices. In the case of mass disasters, where a large number of individuals are to be identified, gathering the population frequency data and calculating the kinship indices can be an intricate process which requires a lot of time and huge resources. The new method of allele matching cut off score (AMCOS) developed in this study is based on the allele sharing approach. This approach simply refers to the number of shared alleles (1 or 2) between the two individuals; also known as identical by state (IBS) alleles which might have been inherited from a recent common ancestor in which the alleles are identical by descendent (IBD). In case of mass disasters, this method can be used to narrow down the number of pairs (dead and alive) to be matched for kinship without using the allele frequency data. The results obtained from this method could further be confirmed by LR based method, which uses the allele frequency data of the respective population of the pairs being tested for kinship. AMCOS method has been tested for its sensitivity, specificity and various other statistical parameters and has shown promising values for the same in various types of kinship analyses. This ascertains the authenticity and potential use of this method in forensic practice but only after its validation in a larger sample size. AMCOS method has been tested on siblings and grandparent-grandchildren by using autosomal and X-STR markers both, as the reference samples from the parents cannot always be available for the identification. The present study also compared the results shown by the autosomal and X-STR markers in siblings and grandparent-grandchildren identification, thereby suggesting the use of better set of markers on the basis of obtained values of various statistical parameters. Nature Publishing Group UK 2022-11-27 /pmc/articles/PMC9701697/ /pubmed/36437267 http://dx.doi.org/10.1038/s41598-022-22805-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kakkar, Sonia
Sarma, Phulen
Panigrahi, Inusha
Mandal, S. P.
Shrivastava, Pankaj
Kumawat, R. K.
Development of a new screening method for faster kinship analyses in mass disasters: a proof of concept study
title Development of a new screening method for faster kinship analyses in mass disasters: a proof of concept study
title_full Development of a new screening method for faster kinship analyses in mass disasters: a proof of concept study
title_fullStr Development of a new screening method for faster kinship analyses in mass disasters: a proof of concept study
title_full_unstemmed Development of a new screening method for faster kinship analyses in mass disasters: a proof of concept study
title_short Development of a new screening method for faster kinship analyses in mass disasters: a proof of concept study
title_sort development of a new screening method for faster kinship analyses in mass disasters: a proof of concept study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9701697/
https://www.ncbi.nlm.nih.gov/pubmed/36437267
http://dx.doi.org/10.1038/s41598-022-22805-w
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